Stem-loop atr-MIR8563

Accession

MI0027441

Description

Amborella trichopoda atr-MIR8563 precursor miRNA

Sequence

1458 reads, 1120 reads per million, 4 experiments

uuguaauuuguggaacauuaauuagacagaugaaagaugcaacaugaaaugaaauacaaggaaaacgagaucaucgucauccaucaauuuccuuugcuuuugcccuuuuccacuuaguuucuuguacgcaugcuauguuaacucucccucgcauaacuguauucauuaaCUCCAUACUCUAAGCUGUUAGAAUugcuacauuccauguggcuagacgaauuccaagagaauaggauuugucgagucacauggaauguaggaacucuaacagguaagaguacggaguuaguagauacaaugaggcgaaguagaauuaacauaguaugugccuauaggaaauuaaguggaaagaggcaaaagcuaaggaaauuaauagaugaugaugauugcauuuuccuuauauuucauguuguuuauuuaaucucuauaauuaauguuuuacaaauuauaa
.(((((((((((((((((((((((...((((.(((...(((((((((((((......((((((((.(.(((((((((((((.((.(((((((((.(((((((((.((((((((((((((((((((((((((((((((((((.(((.(.((((.....((((((.(((((((((.((((((.(.((((((((.((.(((((((((((((((((.(((((((((..........))))))))).))))))))))))))))).)).)))))))).).)))))).))))))))).)))))).....)))).).))).)))))))))))))))..))))))))))))))))))))).))))))))).))))))))).)).))))))))))))).).)))))))).)))))))))))))...))).))))...))))))))))))))))))))))).

Structure

u                       gac    g   gau             aaauac        c a             c  c         u         c                     --               c   c c    auaac      c         A      A G        A  g                 a         caag 
 uguaauuuguggaacauuaauua   agau aaa   gcaacaugaaaug      aaggaaaa g gaucaucgucauc au aauuuccuu gcuuuugcc uuuuccacuuaguuucuugua  cgcaugcuauguuaa ucu c ucgc     uguauu auuaaCUCC UACUCU A CUGUUAGA Uu cuacauuccauguggcu gacgaauuc    a
 |||||||||||||||||||||||   |||| |||   |||||||||||||      |||||||| | ||||||||||||| || ||||||||| ||||||||| |||||||||||||||||||||  ||||||||||||||| ||| | ||||     |||||| ||||||||| |||||| | |||||||| || ||||||||||||||||| |||||||||     
 auauuaaacauuuuguaauuaau   ucua uuu   uguuguacuuuau      uuccuuuu c uuaguaguaguag ua uuaaaggaa cgaaaacgg gaaaggugaauuaaaggauau  guguaugauacaauu aga g agcg     acauag ugauugagg augaga u gacaaucu aa gauguaagguacacuga cuguuuagg    g
a                       auc    a   auu             -----a        a g             a  a         u         a                     cc               a   u a    gagua      a         c      a g        c  g                 g         auaa 

Annotation confidence Not enough data

Genome context

scaffold00021: 1174892-1175342 [-]

Mature atr-miR8563

• Accession: MIMAT0033839
• Description: Amborella trichopoda atr-miR8563 mature miRNA
• Sequence: 170 - CUCCAUACUCUAAGCUGUUAGAAU - 193
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089