Stem-loop atr-MIR8565g

Accession

MI0027443

Description

Amborella trichopoda atr-MIR8565g precursor miRNA

Gene family

MIPF0001889; MIR8565

Sequence

439 reads, 1230 reads per million, 4 experiments

agaguaaugauccugugagauccuuccacaccCAUGUGUGUAGGAUUCCAAAUGAUcaccauuaaauuugguacaaauuuucauaaaaguuaucacaugggugugggacuugacuuuuuuuagagauuugugucaaauuuaauggauaucuuuugggaucuuacacacaugggugugggaggguuucauaggaucauuacucu
((((((((((((((((((((((((((((((((((((((((((((((((((((.(((..(((((((((((((((((((((((...(((((((((((((....)))))....))))))))....)))))))))))))))))))))))..))).))))))))))))))))))))))))))))))))))))))))))))))))))))

Structure

                                                    U   ca                       -cau        ----     u 
agaguaaugauccugugagauccuuccacaccCAUGUGUGUAGGAUUCCAAA GAU  ccauuaaauuugguacaaauuuu    aaaaguua    ucaca g
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||    ||||||||    |||||  
ucucauuacuaggauacuuugggaggguguggguacacacauucuaggguuu cua  gguaauuuaaacuguguuuagag    uuuucagu    ggugu g
                                                    u   ua                       auuu        ucag     g 

Annotation confidence Not enough data

Genome context

scaffold00023: 5789125-5789327 [-]

Mature atr-miR8565g

• Accession: MIMAT0033841
• Description: Amborella trichopoda atr-miR8565g mature miRNA
• Sequence: 33 - CAUGUGUGUAGGAUUCCAAAUGAU - 56
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089