miRBase entry: atr-MIR8565a

Stem-loop atr-MIR8565a


Accession
MI0027448
Description
Amborella trichopoda atr-MIR8565a precursor miRNA
Gene family
MIPF0001889; MIR8565


Sequence

4056 reads, 3600 reads per million, 4 experiments
uauauauauauagaguaaugauccuaugagacuuucccacacccauguguguaggaccucaaagguucaccauuaaauUUGGCACAGAUCUCUAGAAAAGUUaucacaugggugugggacuugacuuuucuagauaucugugccaaauuuaguggugauccuuugggguccuacacacauggguguggaagggucucucaaggucauuucccauauauauaua
(((((((((((.(.(.(((((((....((((((((.(((((((((((((((((((((((((((((.(((((((((((((((((((((((.((((((((((((((((((....)))))....))))))))))))).))))))))))))))))))))))).))))))))))))))))))))))))))))).))))))))....))))))).)).)))))))))))

Structure
           a a u       cuau        c                             u                       C             ----     u 
uauauauauau g g aaugauc    gagacuuu ccacacccauguguguaggaccucaaagg ucaccauuaaauUUGGCACAGAU UCUAGAAAAGUUa    ucaca g
||||||||||| | | |||||||    |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    |||||  
auauauauaua c c uuacugg    cucuggga gguguggguacacacauccugggguuucc aguggugauuuaaaccgugucua agaucuuuucagu    ggugu g
           c - u       aacu        a                             u                       u             ucag     g 


Annotation confidence Low
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Genome context
scaffold00025: 1560375-1560597 [-]

Database links

Mature atr-miR8565a

Accession MIMAT0033846
Description Amborella trichopoda atr-miR8565a mature miRNA
Sequence 79 - UUGGCACAGAUCUCUAGAAAAGUU - 102
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089