miRBase entry: atr-MIR8565d

Stem-loop atr-MIR8565d


Accession
MI0027451
Description
Amborella trichopoda atr-MIR8565d precursor miRNA
Gene family
MIPF0001889; MIR8565


Sequence

2987 reads, 1985 reads per million, 4 experiments
gguuauuuaacuaaagaguaaugauccuaugagacccucccacacccauguguauaggaccccaaaggaucaccauuaaaUUUGGCACAGAUCUCUAGAAAAGUcaaaucuuacacccaugugauaauuuuucuagagaucugugccaaauuuaauagugauccuuugggauccuacacacauggguguggacgggucucauaggaucauuacucuuaacuaaaaacauaaagcuagcc
(((((((((....((((((((((((((((((((((((..((((((((((((((.(((((.(((((((((((((.((((((((((((((((((((((((((((((...(((..(((....)))))).)))))))))))))))))))))))))))))).))))))))))))).))))).))))))))))))))..))))))))))))))))))))))))...))))..........)))))

Structure
     ----------    acua                        uc              a     c             c                              caa   uu   c 
gguua          uuua    aagaguaaugauccuaugagaccc  ccacacccaugugu uagga cccaaaggaucac auuaaaUUUGGCACAGAUCUCUAGAAAAGU   auc  aca c
|||||          ||||    ||||||||||||||||||||||||  |||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||   |||  |||  
ccgau          aaau    uucucauuacuaggauacucuggg  gguguggguacaca auccu ggguuuccuagug uaauuuaaaccgugucuagagaucuuuuua   uag  ugu c
     cgaaauacaa    -caa                        ca              c     a             a                              --a   --   a 


Annotation confidence Not enough data
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Genome context
scaffold00131: 971786-972024 [+]

Database links

Mature atr-miR8565d

Accession MIMAT0033849
Description Amborella trichopoda atr-miR8565d mature miRNA
Sequence 81 - UUUGGCACAGAUCUCUAGAAAAGU - 104
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089