miRBase entry: atr-MIR8573

Stem-loop atr-MIR8573


Accession
MI0027458
Description
Amborella trichopoda atr-MIR8573 precursor miRNA


Sequence

2105 reads, 3713 reads per million, 4 experiments
cuagauugguuucguuauaacaaagaaguuggucugacgcaaugugugucggaucagcuugucccuauugaagccagucuggcacacauugugucagaccggcuucauuauaaguaaugaagCCGGUCUGGCACAAUGUGUGCuggaccgguuucaauagggacaagcugguuugguauauauuguguugggccaguuucauuaacggcuucaauaggg
((..(((((..((((((.......(((((((((((((((((((((((((((((((((((((((((((((((((((.((((((((((((((((((((((((((((((((((....)))))))))))))))))))))))))))))))))).)))))))))))))))))))))))))))))))))))))))))))))))))))..))))))..))))).)).

Structure
-  ag     uu      uaacaaa                                                   a                                  u 
 cu  auugg  ucguua       gaaguuggucugacgcaaugugugucggaucagcuugucccuauugaagcc gucuggcacacauugugucagaccggcuucauua a
 ||  |||||  ||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  
 gg  uaacu  ggcaau       cuuugaccggguuguguuauauaugguuuggucgaacagggauaacuuugg cagguCGUGUGUAACACGGUCUGGCCgaaguaau a
g  -a     uc      -----ua                                                   c                                  g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold00029: 3790328-3790546 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from atr-MIR8573
Name Accession Chromosome Start End Strand Confidence




Database links

Mature atr-miR8573

Accession MIMAT0033856
Description Amborella trichopoda atr-miR8573 mature miRNA
Sequence 123 - CCGGUCUGGCACAAUGUGUGC - 143
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089