Stem-loop atr-MIR8575

Accession

MI0027460

Description

Amborella trichopoda atr-MIR8575 precursor miRNA

Sequence

2216 reads, 2976 reads per million, 4 experiments

aaacuuagacaucuuguuggaauccuuuuauauugaaaucgugcuauaaaaguacuuaaugucaccuaaaaucucacuucgccuuuuuuuuugaaauguuguauAGAUGUGUCGUGUCUGAAAGGUCAauuuugaaauugacguuucugacacuuguuucuguguuagauauuuacauuuguauccauuuuuaggaaacacauuuuuauaguugugucacaaagauaugaauauaagugcguauuugacacggauacaagcguucaaaacgucaauauuaaaauugauuuuucaaacgcaacaugucucuacaacauuuagauaaaugaggaggugguguuuuaggugucauuaaaguacuuuuauggcagaucucaucagaaaaguuaacaagaagugucuaaguuu
((((((((((((((((((((....(((((....(((.(((.((((((((((((((((((((.((((((((((.((((((..((((.(((.((.((((((((((.((((((((.((((.(((((((((((((((((.((((((((((..(((.(((((.((((((((((((((...(((((((((.(((.(((..(..(((((..........)))))..)..))).))).))))))))).)))))))))))))).))))).)))..)))))))))).))))))))))))))))).)))).)))))))).)))))))))).)).))).)))))))))).)))))))))).)))).))))))))))))))))))).)))....))))))))))))))..)))))))))))

Structure

           --         aauc     auau   a   g                -    u          c      cg    u   u  g          u        C    C                 a          cu   a     u              uua         c   u   ag aa     uuuu 
aaacuuagaca  ucuuguugg    cuuuu    uga auc ugcuauaaaaguacuu aaug caccuaaaau ucacuu  ccuu uuu uu aaauguugua AGAUGUGU GUGU UGAAAGGUCAauuuuga auugacguuu  gac cuugu ucuguguuagauau   cauuuguau cau uuu  g  acaca    u
|||||||||||  |||||||||    |||||    ||| ||| |||||||||||||||| |||| |||||||||| ||||||  |||| ||| || |||||||||| |||||||| |||| ||||||||||||||||| ||||||||||  ||| ||||| ||||||||||||||   ||||||||| ||| |||  |  |||||     
uuugaaucugu  agaacaauu    gaaaa    acu uag acgguauuuucaugaa uuac guggauuuug ggugga  ggag aaa ag uuuacaacau ucuguaca cgca acuuuuuaguuaaaauu uaacugcaaa  uug gaaca aggcacaguuuaug   gugaauaua gua aga  c  ugugu    a
           ga         ----     gacu   c   -                a    u          u      --    u   u  a          c        a    a                 a          ac   c     u              --c         a   u   aa ac     ugau 

Annotation confidence Not enough data

Genome context

scaffold00029: 4695265-4695672 [+]

Mature atr-miR8575

• Accession: MIMAT0033858
• Description: Amborella trichopoda atr-miR8575 mature miRNA
• Sequence: 105 - AGAUGUGUCGUGUCUGAAAGGUCA - 128
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089