miRBase entry: atr-MIR8575

Stem-loop atr-MIR8575


Accession
MI0027460
Description
Amborella trichopoda atr-MIR8575 precursor miRNA


Sequence

2252 reads, 1773.0 reads per million, 2 experiments
aaacuuagacaucuuguuggaauccuuuuauauugaaaucgugcuauaaaaguacuuaaugucaccuaaaaucucacuucgccuuuuuuuuugaaauguuguauagaugugucgugucugaaaggucaauuuugAAAUUGACGUUUCUGACACUUGuuucuguguuagauauuuacauuuguauccauuuuuaggaaacacauuuuuauaguugugucacaaagauaugaauauaagugcguauuugacACGGAUACAAGCGUUCAAAACGUCaauauuaaaauugauuuuucaaacgcaacaugucucuacaacauuuagauaaaugaggaggugguguuuuaggugucauuaaaguacuuuuauggcagaucucaucagaaaaguuaacaagaagugucuaaguuu
((((((((((((((((((((....(((((....(((.(((.((((((((((((((((((((.((((((((((.((((((..((((.(((.((.((((((((((.((((((((.((((.(((((((((((((((((.((((((((((..(((.(((((.((((((((((((((...(((((((((.(((.(((..(..(((((..........)))))..)..))).))).))))))))).)))))))))))))).))))).)))..)))))))))).))))))))))))))))).)))).)))))))).)))))))))).)).))).)))))))))).)))))))))).)))).))))))))))))))))))).)))....))))))))))))))..)))))))))))

Structure
           --         aauc     auau   a   g                -    u          c      cg    u   u  g          u        c    c                 A          CU   A     u              uua         c   u   ag aa     uuuu 
aaacuuagaca  ucuuguugg    cuuuu    uga auc ugcuauaaaaguacuu aaug caccuaaaau ucacuu  ccuu uuu uu aaauguugua agaugugu gugu ugaaaggucaauuuugA AUUGACGUUU  GAC CUUGu ucuguguuagauau   cauuuguau cau uuu  g  acaca    u
|||||||||||  |||||||||    |||||    ||| ||| |||||||||||||||| |||| |||||||||| ||||||  |||| ||| || |||||||||| |||||||| |||| ||||||||||||||||| ||||||||||  ||| ||||| ||||||||||||||   ||||||||| ||| |||  |  |||||     
uuugaaucugu  agaacaauu    gaaaa    acu uag acgguauuuucaugaa uuac guggauuuug ggugga  ggag aaa ag uuuacaacau ucuguaca cgca acuuuuuaguuaaaauu uaaCUGCAAA  UUG GAACA AGGCAcaguuuaug   gugaauaua gua aga  c  ugugu    a
           ga         ----     gacu   c   -                a    u          u      --    u   u  a          c        a    a                 a          AC   C     U              --c         a   u   aa ac     ugau 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
scaffold00029: 4695265-4695672 [+]

Database links

Mature atr-miR8575-5p

Accession MIMAT0033858
Description Amborella trichopoda atr-miR8575-5p mature miRNA
Sequence 135 - AAAUUGACGUUUCUGACACUUG - 156
Evidence experimental
Illumina [1]

Mature atr-miR8575-3p

Accession MIMAT0058658
Description Amborella trichopoda atr-miR8575-3p mature miRNA
Sequence 250 - ACGGAUACAAGCGUUCAAAACGUC - 273
Evidence experimental
unknown

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089