miRBase entry: atr-MIR8576

Stem-loop atr-MIR8576


Accession
MI0027461
Description
Amborella trichopoda atr-MIR8576 precursor miRNA


Sequence

476 reads, 535 reads per million, 4 experiments
auagacuacuguggguauauccuugugguuaguggagaaaAGCCAUCAUACUGGAUUUGUCGUAaaauugagaugauuucguuuccuuccuuaucagaaaggggcuccacaauggugcggagcggggcuucuuucaaaggggggagugaggguuguucugaaagugggagggagcccucucaauuuuacgacaaauccgguccgauggcucuucuccacuaaccacaaggauauagggacucuau
(((((.....((...((((((((((((((((((((((((.(((((((..((((((((((((((((((((((((((....))))(((((((((....((((((((((((.(...........).)))))))))))).)))))))))..(((((((.((((.......))))..)))))))))))))))))))))))))))))..))))))).))))))))))))))))))))))))...)))))))

Structure
     cuacu  ggg                        a       AU                      ----------------------gaugauuucguu         auca            a aaug 
auaga     gu   uauauccuugugguuaguggagaa AGCCAUC  ACUGGAUUUGUCGUAaaauuga                                  uccuuccuu    gaaaggggcucc c    g
|||||     ||   |||||||||||||||||||||||| |||||||  ||||||||||||||||||||||                                  |||||||||    |||||||||||| |    u
uaucu     ca   auauaggaacaccaaucaccucuu ucgguag  uggccuaaacagcauuuuaacu                                  aggggggaa    cuuucuucgggg g    g
     -----  ggg                        c       cc                      cucccgagggagggugaaagucuuguugggagug         ---a            c aggc 


Annotation confidence Not enough data
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Genome context
scaffold00029: 6178354-6178598 [-]

Database links

Mature atr-miR8576

Accession MIMAT0033859
Description Amborella trichopoda atr-miR8576 mature miRNA
Sequence 41 - AGCCAUCAUACUGGAUUUGUCGUA - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089