miRBase entry: atr-MIR8581

Stem-loop atr-MIR8581


Accession
MI0027466
Description
Amborella trichopoda atr-MIR8581 precursor miRNA


Sequence

1672 reads, 1402 reads per million, 4 experiments
uuaacauccuaaucgucguacuaaaauucucucauuguugguacuuaucuauauguuucgcauauggguguuugagagaggguuucugccgaacucaaguccccgacccgugaccucuuugggcucguagaaaaucuaggucaaucaaguugguggaccuaguuuuuccaucggccugaagaggucucgggucggggacccagguuugggaggaagacucucccuuagaacaaccacaagcaaagcguguggauagguaccaaugaUGAGAGAAUUUUGGUAUGACGACUagggugcuag
....(((((((.((((((((((((((((((((((((((((((((((((((((((((((.((...(((.(((((..(((((..(((((.(((((((...((((((((((((.((((((((((((((.((.(((((.(((((((.((((...)))).))))))).))))).)).)))))))))))))).))))))))))))...))))))).)))))..))))).....))))).)))...)).)))))))))))))))))))))))))))))))))))))))))))))).)))))))....

Structure
uuaa       a                                              c  aua   g     ---ga     gg     g       caa            u              c  a     u       a    a 
    cauccua ucgucguacuaaaauucucucauuguugguacuuaucuauauguuu gc   ugg uguuu     gagag  uuucu ccgaacu   guccccgacccg gaccucuuugggcu gu gaaaa cuagguc auca  
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||   ||| |||||     |||||  ||||| |||||||   |||||||||||| |||||||||||||| || ||||| ||||||| |||| g
    gugggaU AGCAGUAUGGUUUUAAGAGAGUaguaaccauggauaggugugcgaa cg   acc acaag     cucuc  aagga gguuugg   caggggcugggc cuggagaaguccgg ua cuuuu gauccag uggu  
gauc       C                                              a  aac   a     auucc     ag     g       acc            u              c  c     u       g    u 


Annotation confidence Low
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Genome context
scaffold00037: 1871777-1872076 [-]

Database links

Mature atr-miR8581

Accession MIMAT0033865
Description Amborella trichopoda atr-miR8581 mature miRNA
Sequence 267 - UGAGAGAAUUUUGGUAUGACGACU - 290
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089