miRBase entry: atr-MIR8583

Stem-loop atr-MIR8583


Accession
MI0027469
Description
Amborella trichopoda atr-MIR8583 precursor miRNA


Sequence

1442 reads, 2062 reads per million, 4 experiments
aggucaaggugguaGCACCACUUGUGACUUAGCUACUGgacuagguuuccauucuuaucaaugccuaacccauaauuaguggucauaagugggaauggaaaccuagaccgguagcugagacuguauuccuaccccauaauuaguagucaucagugggaaaccuaguccaguagcugaggcucaagugguacuacuaccaugacuuuaauccccuuauuaaaacuaccccauaauuaguagucaucagugggaaaccuaguccaguagcugaggcucaagugguacuacuaccaugacuu
.(((((.((((((((.((((((((.(.(((((((((((((((((((((((((((((((..(((((...............)).)))..))))))))))).(((......))).((((.(((((..(((((((....................)))))))...)))))))))...(((((.(((..(((((....))))))))))))).((((((.......(((((..........)))))....)).)))))))))))))))))))))))).).)))))))).)))))))).))))).

Structure
a     a        C        U A                    ---------------------------------------------------------------------------------------------------------------------------------------------------------           ca   -  uaaccc 
 gguca ggugguaG ACCACUUG G CUUAGCUACUGgacuagguu                                                                                                                                                         uccauucuuau  aug cc      a
 ||||| |||||||| |||||||| | ||||||||||||||||||||                                                                                                                                                         |||||||||||  ||| ||      u
 ucagu ccaucauc uggugaac c gagucgaugaccugauccaa                                                                                                                                                         agguaagggug  uac gg      a
u     a        a        u g                    agggugacuacugaugauuaauaccccaucaaaauuauuccccuaauuucaguaccaucaucauggugaacucggagucgaugaccugauccaaagggugacuacugaugauuaauaccccauccuuaugucagagucgauggccagauccaa           aa   u  ugauua 


Annotation confidence Low
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Genome context
scaffold00039: 3157489-3157787 [-]

Database links

Mature atr-miR8583

Accession MIMAT0033868
Description Amborella trichopoda atr-miR8583 mature miRNA
Sequence 15 - GCACCACUUGUGACUUAGCUACUG - 38
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089