miRBase entry: atr-MIR8584

Stem-loop atr-MIR8584


Accession
MI0027470
Description
Amborella trichopoda atr-MIR8584 precursor miRNA


Sequence

986 reads, 757 reads per million, 3 experiments
gguaucagacacuugguuagguggucaagacauuauuuggacacagcaaugacguccacgguucaaaucucauugccgaucuuucuaagaaaguaaaguugacgaggauuUGAACCCUGGUCGUCGCGCUGUGgccuugauguuauagcuaucaaacuaagagcccggacucc
((..((.....(((((((.((((((...(((((((...((.((((((..(((((.(((.(((((((((((..(((.(((((((((...)))))....)))).)))))))))))))).))).))))).)))))).)).)))))))...)))))).)))))))......))..))

Structure
  ua  -agaca       a      caa       uuu  a      aa     u   c           ca   c    ----     u 
gg  uc      cuugguu gguggu   gacauua   gg cacagc  ugacg cca gguucaaaucu  uug cgau    cuuuc  
||  ||      ||||||| ||||||   |||||||   || ||||||  ||||| ||| |||||||||||  ||| ||||    ||||| a
cc  ag      gaaucaa cuaucg   uuguagu   cc GUGUCG  GCUGC GGU CCAAGUuuagg  agc guug    gaaag  
  uc  gcccga       a      aua       --u  g      -C     U   C           --   a    aaau     a 


Annotation confidence Not enough data
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Genome context
scaffold00040: 69933-70105 [+]

Database links

Mature atr-miR8584

Accession MIMAT0033869
Description Amborella trichopoda atr-miR8584 mature miRNA
Sequence 111 - UGAACCCUGGUCGUCGCGCUGUG - 133
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089