miRBase entry: atr-MIR8593

Stem-loop atr-MIR8593


Accession
MI0027481
Description
Amborella trichopoda atr-MIR8593 precursor miRNA


Sequence

172 reads, 197 reads per million, 3 experiments
uuccuaguaguccauuccauaggucuuaauaaacccuucaacuaaucuuacauuguauauguuaaccguaccaucagccauguacuucacauuguagacccauuugcagcaaaccaacuucuucccuucugaaggcucaaccgguuuccaaguauuaugcuuaaguaauacuuccauuuccucacacauagccucgugccauuuaggaugagcuaagaccucuauaacaucggaaggaaauagaaacaugaaacaaauagggaguauagaggUCUUAGCUUGUCCUAAAAGGCAUGaggcuaugugugaggagaugggagcauuucuugagcauaauacuugggaacugguugacccuucagaagggaagaaguugguuugcugcaaauggguauacaaugugaaguccauggcugaugguacgguuaacauauacaaugugagauugguggcugaaggguuuauuaagaccuauggaauugacaaauagaaa
...(((...(((.(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((((((((((((.((((((((((((((((((((((((((((((((((((((.(((((((((((((((((((((((((((((.(((.((((((((((((((((((((((((((((((.(((((((((((((((((((((((((...((............................))...))))))))))))))))))))))))).)))))))))))))))))))))))))))))).))).))))))))))))))))))))))))))))).)))))))))))))))))))))))))))))))))))))).))))))))))))).))))))))))))))))))))))))))))))))))))))))))...))))))))))))))))))))))))))).)))...)))...

Structure
uuc   gua   c                           ---                                          u             g                                      c                             u   a                              a                         aca  ggaaggaaauaga 
   cua   guc auuccauaggucuuaauaaacccuuca   acuaaucuuacauuguauauguuaaccguaccaucagccaug acuucacauugua acccauuugcagcaaaccaacuucuucccuucugaagg ucaaccgguuuccaaguauuaugcuuaag aau cuuccauuuccucacacauagccucgugcc uuuaggaugagcuaagaccucuaua   uc             a
   |||   ||| |||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||   ||              
   gau   cag uaagguauccagaauuauuugggaagu   ugguuagaguguaacauauacaauuggcaugguagucgguac ugaaguguaacau uggguaaacgucguuugguugaagaagggaagacuucc aguuggucaaggguucauaauacgaguuc uua gaggguagaggaguguguaucggaGUACGG AAAUCCUGUUCGAUUCUggagauau   gg             a
aaa   aaa   u                           cgg                                          c             a                                      c                             u   c                              A                         gag  auaaacaaaguac 


Annotation confidence Not enough data
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Genome context
scaffold00072: 189561-190053 [+]

Database links

Mature atr-miR8593

Accession MIMAT0033880
Description Amborella trichopoda atr-miR8593 mature miRNA
Sequence 273 - UCUUAGCUUGUCCUAAAAGGCAUG - 296
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089