miRBase entry: atr-MIR8598

Stem-loop atr-MIR8598


Accession
MI0027487
Description
Amborella trichopoda atr-MIR8598 precursor miRNA


Sequence

1465 reads, 16170 reads per million, 4 experiments
ucucucaaccuaaacccacgcgacccuaaacccucucuccuucaagcuuuugccuaacugaagccacucucucaacgucaagccuuucacccuccucucuugcuucccuacucucccuuuggagccauugggcgucauauuuucccuuuacaucuccaauaccaagccuccgaccucuucauauucggugcucucuacauccccacaaaagcgagcacauucacgauccauaugaggaucagugagagggagaucgaacuucagaaaccauaucgagaccccgugaaggucccauuucaauucgacgauuuuagaaauugagcgucucuggcucauccguccaaagacaaccggaacgggccccucacaccgacaaacucugauucgggccgucaacucugggugucgggccuuuggggccggcuuugccucaaauagguuugugcuuuuuuuuccccuuuguuauuguuauuauuauugucuuguuauuuuauuuuuaaagcauuuucaaacccccuacccauuuuccuguuuuuuuuaauuuuauauuuguuuugguucuaaggugaagUUUAGUCAGCACGAUCGGUGGUGCgugaaugagaggucauuuuuagucaauuuuucagauauccauaauuugacggaacccuuauuuuuucugccucugaucgacgaguuugaaagggaaaucagguggaaauuuaugauuauuacuugauuucucguuuaaacuaguugaucauagguagaaaauaaggggcuccgucaaaucauagauucucaaaaauugacuaaaaaugaccucuuuuucacggacugccaaucgugucggcuaaacuucgccuuagaaagaaaaaaauagaaaauuaaaacauagcaaauguuuuugaggggggggggggguggggguggaugaaaauacuuuaaaaauaaaauaacaagauaaaaauaaauaauaaaaaaaaggagaaaaaaagagcacauacguauuugaggugaagccaagcccacauuugauggcucggaucagaguuuguuggugcgaggggaccguucccauuguugucggacggaugagcuagagaugcucaauuuuuuaaguuaucaucgaauugaaauggggccuucacagggucucaauauggauucugaaguucgauaucccucucauugauccuuguauugaucgugaaugugcuugcuuuuguggggauuuagagagcgaauaugaagaggcuaggacuuguuauuggagcugugaagggaaaauaugaugcccaauggcugcaaaggggagaggagggugaaaggcuugacgaugagagagagucuugagggagaguggcuugagauaggcaaaggcuugagggagauaggguuuggggucgcauggguuuacgcugagaga
(((((((.(.((((((((.(((((((((((((((.(((((((((((((((((((((.((.(((((((((((((..((((((((((((((((((((((((...............(((((((.((((((((((((((((((((((((((((((.((((((((.(((((((..(.(((((((((((((...((((((((.((((((((((((((((((((((((((((((.((((((((((((((((((((((.((((((((((((((.((((((.(((((((.(((((((((((((((((((((((.(((...((((((((((((((((((((((((((((((...((((((.(((((((.((((((.(((((((((((((((((((((((((((((...(((((....(((((...)))))((((((((((((((((.((.((((((((((((((.(((((....(((((((((((.(((((((((((((((((((((((((.(((((((..((((((((((.(((((((.((((((((((((((.(((((.((((..((((((((((((((((((((.(((((((.((((((.((((((.(((((((((((((((((((((((((.(((.(((.((.((((((((((.(((((((((..(((((((.((((((((.((((((((.((((((((((((((.((((...)))).)))))))))))))).)))))))).)))))))).))))))))))))))))..)))))))))).)).)))))).))))))))))))))))))))))))).)))))).)))))).))))))).)))))))))))))))))))).)))).))))).))))))))))................)))).)))))))))))))))).)..))))))).))))))))))))))))))))))))).))).))))))))...))))).).))))))))))))).)).))))))))))))))))..)))))...))))))))))))))))))))))))))))).)))))).)))))))....))))))))))))))))))))))))))))))))))))......))).))))))))))))))))))))))).))))))).)))))).)))))))))))))).)))))))))))))))))))))).)))))))))))))))))))))))))))))).)))))))))))))))))))))).))).)))).)))))))).)))))))))))))))))))))))))))))).)))))))))))))))))))))))))))))))..((((.....))))..))))))))))))).)).))))))))))))))))))))).))))))))))))))).)))))))).).)))))))

Structure
       a c        c               c                     a  g             ---------------aa                        uugcuucccuacucu       g                              u        c    -   cc a             ggu        c                              c                      g              a      c       c                       c   ---uuu                              aaa      ---c       g      a                             cuc     gucgggccuuuggggcc                g  u             - c     guua        -   a                         c       aa -         a       g    ----------------          a     g    gg                    A       C      G      u                         c   u   c  a          -a         uu       c        g        a              a    u 
ucucuca c uaaaccca gcgacccuaaacccu ucuccuucaagcuuuugccua cu aagccacucucuc                 cgucaagccuuucacccuccucuc               cccuuug agccauugggcgucauauuuucccuuuaca cuccaaua caag ccu  g ccucuucauauuc   gcucucua auccccacaaaagcgagcacauucacgauc auaugaggaucagugagaggga aucgaacuucagaa ccauau gagaccc gugaaggucccauuucaauucga gau      agaaauugagcgucucuggcucauccgucc   gacaac    ggaacgg ccccuc caccgacaaacucugauucgggccgucaa   ugggu                 ggcuuugccucaaaua gu ugugcuuuuuuuu c ccuuu    uuguuauu auu uugucuuguuauuuuauuuuuaaag auuuuca  c ccccuaccc uuuuccu uuuu                uuuuaauuuu uauuu uuuu  uucuaaggugaagUUUAGUC GCACGAU GGUGGU Cgugaa gagaggucauuuuuagucaauuuuu aga auc au auuugacgga  cccuuauuu  ucugccu ugaucgac aguuugaa gggaaaucaggugg aauu  
||||||| | |||||||| ||||||||||||||| ||||||||||||||||||||| || |||||||||||||                 ||||||||||||||||||||||||               ||||||| |||||||||||||||||||||||||||||| |||||||| |||| |||  | |||||||||||||   |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||| ||||||| ||||||||||||||||||||||| |||      ||||||||||||||||||||||||||||||   ||||||    ||||||| |||||| |||||||||||||||||||||||||||||   |||||                 |||||||||||||||| || ||||||||||||| | |||||    |||||||| ||| ||||||||||||||||||||||||| |||||||  | ||||||||| ||||||| ||||                |||||||||| ||||| ||||  |||||||||||||||||||| ||||||| |||||| |||||| ||||||||||||||||||||||||| ||| ||| || ||||||||||  |||||||||  ||||||| |||||||| |||||||| |||||||||||||| |||| a
agagagu g auuugggu cgcugggguuuggga agagggaguucggaaacggau ga uucggugagaggg                 gcaguucggaaagugggaggagag               gggaaac ucgguaacccguaguauaaaagggaagugu gagguuau guuc gga  c ggagaaguauaag   cgagagau uagggguguuuucguucguguaagugcuag uauguuccuaguuacucucccu uagcuugaagucuu gguaua cucuggg cacuuccgggguaaaguuaagcu cua      uuuuuaacucguagagaucgaguaggcagg   cuguug    ccuugcc ggggag gugguuguuugagacuaggcucgguaguu   acccg                 ccgaaguggaguuuau ca acacgagaaaaaa g ggaaa    aauaauaa uaa aauagaacaauaaaauaaaaauuuc uaaaagu  g ggggguggg ggggggg ggag                aaaauuaaaa auaaa aaag  aagauuccgcuucaaaucgg ugugcua ccguca gcacuu uucuccaguaaaaaucaguuaaaaa ucu uag ua uaaacugccu  gggaauaaa  agaugga acuaguug ucaaauuu cucuuuaguucauu uuag  
       c c        a               u                     a  g             aguucugagagagagua                        ---------------       g                              c        u    a   -u -             ---        u                              u                      a              a      a       a                       a   uugaau                              ---      uuac       a      c                             uac     ---------------aa                g  u             a a     -aaa        a   a                         a       ag u         -       g    uuuuuguaaacgauac          g     a    -a                    c       a      g      u                         c   -   a  c          cg         --       u        a        g              a    u 


Annotation confidence Not enough data
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Genome context
scaffold00007: 304230-305640 [-]

Database links

Mature atr-miR8598

Accession MIMAT0033887
Description Amborella trichopoda atr-miR8598 mature miRNA
Sequence 572 - UUUAGUCAGCACGAUCGGUGGUGC - 595
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089