miRBase entry: atr-MIR8599

Stem-loop atr-MIR8599


Accession
MI0027488
Description
Amborella trichopoda atr-MIR8599 precursor miRNA


Sequence

163 reads, 122 reads per million, 2 experiments
aggaaguggaguagaggaugauaugCCAAAAUGGCUUGAGUUCUAACCUugaauugaguuccuucacaauauuguaacuguuuuucauauagguaggugucuucaaguguugacaugugucaaagugucaacacaugucgucaugcgauaccaaccaaaaagugaaguguuguggugccguugugaugaaguagauuuaucauauauagguuuuuuagaaguaauauggaaauggaaauguuuggccccucuuuaaugugaucuucuugauggcaauguuacaacgacauucaccuuuugauuggugucgcuuuucgauauacguugacacuuugaaaugugucaacacuugaggacacuuggcuguauagaaaacaaacaaaauuguggaagggcucauugcaauguuugaacucaaacuauuuugacauauugucuucuacucuaccaccu
(((..((((((((((((((((((((.((((((((.((((((((.(((.(((...(((((((.((((((((.((((...(((((((.((((((.(((((((((((((((((((((((((.(((((((((((((..((((((....((((((((((.(((((.(((((.((((((.(((.((((((.((.(((.(((....((((((..(((....(((((.....(((....)))......))))).....)))..))))))))).))).)).)))))).))).))))))))))).))))).))))))))))....))))))..))))))))))))).))))))))))))))))))))))))).)))))).))))))).)))).)))))))).)))))))...))).))).)))))))).)))))))).))))))))))))))))))))..)))

Structure
   aa                    C        C        U   C   aau       c        a    aac       c      g                         g             ac      ucau          c     a     g      g   c      g  g   u   uuua      au   -uuuu     -aguaa   g 
agg  guggaguagaggaugauaug CAAAAUGG UUGAGUUC AAC Uug   ugaguuc uucacaau uugu   uguuuuu auauag uaggugucuucaaguguugacaugu ucaaagugucaac  augucg    gcgauaccaa caaaa gugaa uguugu gug cguugu au aag aga    ucauau  agg     uuaga      uau g
|||  |||||||||||||||||||| |||||||| |||||||| ||| |||   ||||||| |||||||| ||||   ||||||| |||||| ||||||||||||||||||||||||| |||||||||||||  ||||||    |||||||||| ||||| ||||| |||||| ||| |||||| || ||| |||    ||||||  |||     |||||      |||  
ucc  caucucaucuucuguuauac guuuuauc aacucaag uug aac   acucggg agguguua aaca   acaaaag uauguc guucacaggaguucacaacugugua aguuucacaguug  uauagc    cgcugugguu guuuu cacuu acagca cau guaacg ua uuc ucu    agugua  uuc     gguuu      gua a
   ac                    a        a        u   u   guu       a        a    --a       a      g                         a             ca      uuuu          a     c     -      a   u      g  g   u   ----      au   ucccc     guaaag   a 


Annotation confidence Not enough data
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Genome context
scaffold00099: 2088970-2089422 [+]

Database links

Mature atr-miR8599

Accession MIMAT0033888
Description Amborella trichopoda atr-miR8599 mature miRNA
Sequence 26 - CCAAAAUGGCUUGAGUUCUAACCU - 49
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089