miRBase entry: atr-MIR8600

Stem-loop atr-MIR8600


Accession
MI0027489
Description
Amborella trichopoda atr-MIR8600 precursor miRNA


Sequence

6051 reads, 3988 reads per million, 4 experiments
acuauggaguaauuuaucauuguacucgauaaauuugaaaacuuacauaccguugguuuguacauggaguuuuuuuuauuaaggguauuuuuggucauuaguaggggugugacgucaucuacauggggugugacgucacacuaguggcuuuuaaugcuccauguaggugaugucacAUCUCAUGUAGAUGACGUCACACCccugcuagugacaaaaaauaccuuuacuaaaacaaagcucuauauacaaaauaaggguauauaaauguccaaauuuuguugaguacaauaguaaauuacuccauagu
(((((((((((((((((.(((((((((((((((((((.....(((.(((((.(((.((((((.(((((((((((((((.(((((((((((((.((((((((((((((((((((((((((((((((((((((((((((((.(((((((...........)))).))))))))))))))))))))))))))))))))))))))))))))))))).))))))))))))).))))).)))))))))).)))))).))).))))).))).....)))).))))))))))))))).)))))))))))))))))

Structure
                 c               -    aaaac   c     g   g      c          -     u             g                                              a   -    cuuu 
acuauggaguaauuuau auuguacucgauaaa uuug     uua auacc uug uuugua auggaguuuu uuuua uaaggguauuuuu gucauuaguaggggugugacgucaucuacauggggugugacgucac cua gugg    u
||||||||||||||||| ||||||||||||||| ||||     ||| ||||| ||| |||||| |||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    a
ugauaccucauuaaaug uaacaugaguuguuu aaac     aau uaugg aau aaacau uaucucgaaa aaaau auuuccauaaaaa cagugaucguccCCACACUGCAGUAGAUGUACUCUAcacuguagug gau uacc    a
                 a               u    cugua   a     g   a      a          c     c             a                                              -   g    ucgu 


Annotation confidence Not enough data
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Genome context
scaffold00103: 53962-54268 [+]

Database links

Mature atr-miR8600

Accession MIMAT0033889
Description Amborella trichopoda atr-miR8600 mature miRNA
Sequence 177 - AUCUCAUGUAGAUGACGUCACACC - 200
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089