miRBase entry: atr-MIR8601

Stem-loop atr-MIR8601


Accession
MI0027490
Description
Amborella trichopoda atr-MIR8601 precursor miRNA


Sequence

214 reads, 327 reads per million, 4 experiments
uguuuaugaagaaauuuugaacucagggaacguuugggaugcgugaaaauacuuuugugaaaauauuuuuacaugaaagaacucucccaUGCGAUUAGGUGUUGGAGUUUuuucacaccaauuggcagauaauugcugugaaagaacucucacaccuaaucgcaugggggaggucuuucaugugaauacgaaaguauuuuuacauguaccaaacgugcacucauguacucuacauuucugugcauguca
.(((((...........)))))..((...((((((((.(((.(((((((((((((((((........(((((((((((((.(((((((((((((((((((((.((((((((((((((.((((((.....)))))).)))))))))))))).))))))))))))))))))))).)))))))))))))))))))))))))))))).))).))))))))...))(((((((...........)))))))...

Structure
----uguuuaugaagaaauuuugaacuc  gga        g   c                 aaaauauu             a                     U              c      g 
                            ag   acguuugg aug gugaaaauacuuuugug        uuuacaugaaaga cucucccaUGCGAUUAGGUGU GGAGUUUuuucaca caauug c
                            ||   |||||||| ||| |||||||||||||||||        ||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||| a
                            uc   ugcaaacc ugu cauuuuuaugaaagcau        aaguguacuuucu gaggggguacgcuaauccaca ucucaagaaagugu guuaau g
acuguacgugucuuuacaucucauguac  acg        a   a                 --------             g                     c              c      a 


Annotation confidence Low
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Genome context
scaffold00103: 2041972-2042220 [+]

Database links

Mature atr-miR8601

Accession MIMAT0033890
Description Amborella trichopoda atr-miR8601 mature miRNA
Sequence 90 - UGCGAUUAGGUGUUGGAGUUU - 110
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089