Stem-loop atr-MIR8605

Accession

MI0027494

Description

Amborella trichopoda atr-MIR8605 precursor miRNA

Sequence

722 reads, 953 reads per million, 4 experiments

guauacaaugagaccauuuaccauugauacaaggugguuacaauuccuuacaacuauuugaugugaaauuugauaauuuggauaugguacaaaguucgagaaauuuucuuuugaaguuugaucuuggucaaugcaauaauuguagccacccaauugcacauccaauagucaagauuaaugugaccaccuuguaucaaaggcaacuggucucauucuauacucucuuuuuaccuuuuaugcaaugcgguCACAUUAAUCUCGACCAUUGGAUGuaaaguuggguggcugcaaucauucuuuugaccaagcucucaaacuucaaaagaaauuuucucaaacuuuaugacacauccaaguuaucaaaauucacaucaaauaguuguaaggaauuguaauaccuuguauaaaagguaaauggucucauucuacac
(((...((((((((((((((((.((.((((((((((.((((((((((((((((((((((((((((((.(((((((((((((((.((..(.((((((.((((((.(((((((((((((((((.(((((((((...(((.(((((((((((((((((..(((((((((.(((.((((((((((((((.(.((((((.(((((.....((................)).....))))).)))))).).)))))))))))))).))).)))))))))..))))))))))))))))).)))...)))))))))...))))))))))))))))).)))))).)))))).)..)).))))))))))))))).)))))))))))))))))))))))))))))))))))))))).)).)))))))))))))))).)))..

Structure

--   uac                a  g          g                              a               a  gu c      c      u                 --u         ugc   a                 gc         a   a              a c      c     caacu  ucucauu 
  gua   aaugagaccauuuacc uu auacaaggug uuacaauuccuuacaacuauuugaugugaa uuugauaauuuggau ug  a aaaguu gagaaa uuucuuuugaaguuuga   cuuggucaa   aau auuguagccacccaauu  acauccaau guc agauuaaugugacc c uuguau aaagg     gg       c
  |||   |||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||  | |||||| |||||| |||||||||||||||||   |||||||||   ||| |||||||||||||||||  ||||||||| ||| |||||||||||||| | |||||| |||||     ||        
  cau   uuacucugguaaaugg aa uauguuccau aauguuaaggaauguugauaaacuacacuu aaacuauugaaccua ac  u uuucaa cucuuu aaagaaaacuucaaacu   gaaccaguu   uua uaacgucgguggguuga  uGUAGGUUA CAG UCUAAUUACACugg g aacgua uuucc     uc       u
ca   --c                a  a          -                              a               c  ag a      a      u                 cuc         uuc   c                 aa         C   C              c u      u     auuuu  ucucaua 

Annotation confidence High

Genome context

scaffold00135: 1278150-1278580 [-]

Mature atr-miR8605

• Accession: MIMAT0033894
• Description: Amborella trichopoda atr-miR8605 mature miRNA
• Sequence: 249 - CACAUUAAUCUCGACCAUUGGAUG - 272
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089