miRBase entry: atr-MIR8608

Stem-loop atr-MIR8608


Accession
MI0027498
Description
Amborella trichopoda atr-MIR8608 precursor miRNA


Sequence

229 reads, 154 reads per million, 2 experiments
cacuuaaaagcacucaugagugaauuucuacauuauuuugcucauggcuuaucaccauccgaaguccauuagacaugaucgucaaauauuguuuggauuugaaucauUUUUCUACAGAUCAGAUUGACUUGaaauuuuguggacgugugcgccuuagugagguauaccaaaauaaaauauuaaaaauacaauccaaauauuaaauuaucucaaugaauauuucaaggguauuuuuguuguuuuauuuuuugauaauuauuuuuaaauauuuauuuagguguaaguugguuagauguacacacgcucuaaauuuuaggucaaucuaauuuguagaaaaauuguuaaaauucaaacacuauuaaacaaaugugaccuuaugauggacuuuggaugguuauaagccuuaaauggaauauuguagaaauucacucaugaguguuuguaagug
((((((.(((((((((((((((((((((((((.((((((......(((((((.((((((((((((((((....(((((..((((((((.(((((((((((.(((.((((((((((((((.(((((((((((((((((.(((...(((((((.((.(.(((..(((((((((((((((((.(((((((((..(..(((((((..(((.....))).)))))))..)..))))))))).)))))))))))..(((((.((((....)))).)))))..))))))..))).).)).))))))).)))...))))))))))))))))).)))))))))))))).))).))))))))))).)))).........)))).))))))))))))))))))))).)))))))......)))))).))))))))))))))))))))))))).))))))

Structure
      a                         u      gcucau       c                uaga     uc    ---------    u           g   c              C                 --u   gac       c  u g   gg      ----------------------------           u         aa cc       aa   a 
cacuua aagcacucaugagugaauuucuaca uauuuu      ggcuuau accauccgaaguccau    cauga  guca         aaua uguuuggauuu aau auUUUUCUACAGAU AGAUUGACUUGaaauuu   gug   gugugcg cu a uga  uauacc                            aaaauaaaaua uaaaaauac  u  aaauauu  auu u
|||||| ||||||||||||||||||||||||| ||||||      ||||||| ||||||||||||||||    |||||  ||||         |||| ||||||||||| ||| |||||||||||||| |||||||||||||||||   |||   ||||||| || | |||  ||||||                            ||||||||||| |||||||||  |  |||||||  ||| c
gugaau uuugugaguacucacuuaaagaugu auaagg      ccgaaua ugguagguuucaggua    guauu  cagu         uuau acaaacuuaaa uug uaaaaagauguuua ucuaacuggauuuuaaa   cgc   cacaugu ga u guu  augugg                            uuuuauuuugu guuuuuaug  a  uuuauaa  uaa u
      g                         u      uaaauu       u                ----     -c    guaaacaaa    c           a   u              a                 ucu   --a       a  u g   ga      auuuauuuauaaauuuuuauuaauaguu           u         gg ac       -g   c 


Annotation confidence Not enough data
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Genome context
scaffold00007: 2536778-2537225 [+]

Database links

Mature atr-miR8608

Accession MIMAT0033899
Description Amborella trichopoda atr-miR8608 mature miRNA
Sequence 108 - UUUUCUACAGAUCAGAUUGACUUG - 131
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089