miRBase entry: atr-MIR8612

Stem-loop atr-MIR8612


Accession
MI0027502
Description
Amborella trichopoda atr-MIR8612 precursor miRNA


Sequence

1308 reads, 3085 reads per million, 4 experiments
uucaucgugcgguuacgauugucugauaguauuuuauuuuucauuuuuuuuuucuacaaaucggaaugaucugaaauuugaagccuguguucaucaaaaauuagggaaucuuuuaaaaauauauaaaaaaaauauuuuacauaaauaauauugaccaaaauacccaugaaauguuuuagggguauuuugguuaauuuguuuaagcggauaauuuuuuuauauuuuuauuaaaagcaccucaguaagauguacauauccucaaaauuucaacccauuuugauuuuuaaaaccaaaauaaaaaauaaaauacuaccaaauaauugUGACCACGCGAUGAAAUUUGGACAugagaguagacaaaauuacuauucauuuuuaccucguugggaagacuuuuccauccauauauauauauauauucuucuuaacgcuuauuggcaaaaaugaauagugauuuugucuacccucauuacuguccaaauuucaucgugcggucacguuugucuguuaguguuuuauuuuucaguuuuuuucuauaaauuagaaugacuugaaauuucaagaguauguacaucuuacugaggcucauucaaaaaaaauuauccuggaaaacaaaauugaccaaaauacccccaaaacuuuuuaaggguauuuuagucaauauguuucauguaaaauauuuuuuuauauuuuucgaacauuaccuuauuauugaugaauacacgcuccaaauuucaggucauucuaauuuguaaaaauaaauaaacaauaaaacacuaucagauaaucgugaccacgcgauuaa
...((((((.((((((((((((((((((((.(((((((.((.((((.((((...(((((((.((((((((((((((((((.(((.((((((((((((.(((.(((..((.(((.(((((((((...((((((((((((((((.((..((((((((.(((((((((.(((((.(((((.(((((((((((((((((((((((....(((((((((((((...((((....))))...((((((((((((((((((((.((..(((((((((..(((((((((((........(((((.(((((((((((((((.((.((((.(((((((.((((((((((((((((((((((.(((((((((((((((((((((((((.((.(((((((((((...........((((((....)))))))))))))))))......)).))))))))))))))))))))))))).))))....)))))))))))))))))).))))))).)))).)).)))))))))))))))..))))).......)))))))))))..)))))))))..)).))))))))))))))))))))........)))))))))))))....)))).))))))))))))))))))).))))).))))).))))))))).))))))))..)).))))))))))))))))))))))))).))).))..))).))).)))))))))))).))).)))))))))))))))))).))))))))))).)))).)).))))))).)))))))))))))))))))).))))))...

Structure
uuc      c                    a       u  c    u    uuc       c                  a   c            a   u   ga  c   u         uaa                a  ua        c         a     u     a                   -    aagc             auauuuuuauuaaaagca                    c  ca         cc           uuaaaacc     -a               c  a    u       A                  ----    a                         a  -----u           cuuuuccaucc      a 
   aucgug gguuacgauugucugauagu uuuuauu uu auuu uuuu   uacaaau ggaaugaucugaaauuug agc uguguucaucaa aau agg  au uuu aaaaauaua   aaaaaauauuuuacau aa  auauugac aaaauaccc ugaaa guuuu gggguauuuugguuaauuu guuu    ggauaauuuuuuu                  ccucaguaagauguacauau cu  aaauuucaa  cauuuugauuu        aaaau  aaaaauaaaauacua ca auaa ugUGACC CGCGAUGAAAUUUGGACA    ugag guagacaaaauuacuauucauuuuu cc      cguugggaaga           auauau u
   |||||| |||||||||||||||||||| ||||||| || |||| ||||   ||||||| |||||||||||||||||| ||| |||||||||||| ||| |||  || ||| |||||||||   |||||||||||||||| ||  |||||||| ||||||||| ||||| ||||| ||||||||||||||||||| ||||    |||||||||||||                  |||||||||||||||||||| ||  |||||||||  |||||||||||        |||||  ||||||||||||||| || |||| ||||||| ||||||||||||||||||    |||| ||||||||||||||||||||||||| ||      |||||||||||           ||||||  
   uagcgc ccagugcuaauagacuauca aaaauaa aa uaaa aaaa   auguuua ucuuacuggacuuuaaac ucg acauaaguaguu uua ucc  ua aag uuuuuauau   uuuuuuauaaaaugua uu  uauaacug uuuuauggg auuuu caaaa ccccauaaaaccaguuaaa caaa    ccuauuaaaaaaa                  ggagucauucuacauguaug ga  uuuaaaguu  guaagauuaaa        uuuug  uuuuuauuuugugau gu uguu gcacugg gugcuacuuuaaaccugu    acuc caucuguuuuagugauaaguaaaaa gg      gcaauucuucu           uauaua a
aau      a                    c       c  a    u    ---       a                  c   c            a   u   au  c   c         ---                c  ug        a         a     u     c                   a    aggu             ----------acuuacuc                    a  ac         ca           -uaucuuu     ac               u  c    u       c                  cauu    c                         c  uuauuc           -----------      u 


Annotation confidence Not enough data
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Genome context
scaffold03445: 1-805 [-]

Database links

Mature atr-miR8612

Accession MIMAT0033904
Description Amborella trichopoda atr-miR8612 mature miRNA
Sequence 324 - UGACCACGCGAUGAAAUUUGGACA - 347
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089