miRBase entry: atr-MIR8613

Stem-loop atr-MIR8613


Accession
MI0027503
Description
Amborella trichopoda atr-MIR8613 precursor miRNA


Sequence

1374 reads, 4441 reads per million, 4 experiments
aucuauaaauagaucauuuaucauuuguauaucgauguuauaauuauucuugucccuuaaauuucaaaaugggugguuguaagauuaucauugaauagacaaaguuucaaaaaaaaaaauuucagacuucgugacucaccucaagauauccaauuugacaucuaaugaguggaaaugauuaugaccuccauguacaaaagaugaggauuauaugcuaggagaccauuuaucuuuauuauaaugagguuauaauugucacuugccauuagaCAUCAAAUUGGAUGACUUGGGAUGugucauaaaguucaugauuuuuaauuauuuuuuaacuuugaguuuagucaauggcauauuuacaaccaucauauuugaaauuugauggacaagcaugauugugacuuucuuguauuaaaaguaaaugaucuuguuguauau
...(((((..(((((((((((.....(((((..((.(((((((((((.(((((((.((((((((((((...((((((((((((....(((((((.(((((((((((..(((((((((((((...(((((.(((((.((.((((((.((((((((((((..(((((((((((...((((((((((((((..((((..(((((((((....................)))))))))..))))..))))))))))))))))))...)))))))..)))))))))))).)))))).)).))))).)))))...))))))).....))))))))))))..))))).)))))))....))))))))))))...)))))))))))).))))))).))))))))))).))..))))).....)))))))))))..)))))...

Structure
auc     au           cauuu     uc  u           u       c            aug            auua       a     --      uc      -----       uca     c     u  c      a            ca       ---    gaa              ca    ca         gauuauaug 
   uauaa  agaucauuuau     guaua  ga guuauaauuau cuugucc uuaaauuucaaa   ggugguuguaag    ucauuga uagac  aaaguu  aaaaaa     aaaaauu   gacuu gugac ca cucaag uauccaauuuga  ucuaaug   agug   augauuaugaccuc  ugua  aaagaugag         c
   |||||  |||||||||||     |||||  || ||||||||||| ||||||| ||||||||||||   ||||||||||||    ||||||| |||||  ||||||  ||||||     |||||||   ||||| ||||| || |||||| ||||||||||||  |||||||   ||||   ||||||||||||||  ||||  |||||||||          
   auguu  ucuaguaaaug     uaugu  uu caguguuagua gaacagg aguuuaaaguuu   cuaccaacauuu    gguaacu auuug  uuucaa  uuuuuu     uuuuuag   uugaa uacug GU GGGUUC GUAGGUUAAACU  agauuac   ucac   uguuaauauuggag  auau  uuucuauuu         u
uau     gu           aaaau     uc  u           c       u            aua            auac       g     ag      --      auuaa       uac     a     u  A      A            AC       cgu    ---              ua    ua         accagagga 


Annotation confidence Not enough data
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Genome context
scaffold00007: 3482754-3483188 [+]

Database links

Mature atr-miR8613

Accession MIMAT0033905
Description Amborella trichopoda atr-miR8613 mature miRNA
Sequence 271 - CAUCAAAUUGGAUGACUUGGGAUG - 294
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089