miRBase entry: atr-MIR8614

Stem-loop atr-MIR8614


Accession
MI0027504
Description
Amborella trichopoda atr-MIR8614 precursor miRNA


Sequence

372 reads, 451 reads per million, 4 experiments
uauacaaugagaccauuuacuuuugauacaaugaggucacaaucaucauuggcuguuggauuugauaucgggugguugaggauguaucauuguuugggcaccaaguccaaaaacauuucucaauuguugugucgcacuuuuaucuauuggauuucaugucCAAUAGCUAAAGUGAUUGUGACCuccuuguauaaaaaauaaauagucucauacuaua
((((..(((((((.(((((.((((.((((((.((((((((((((((..(((((((((((((.(((.(((.(((((.(((((.(((..(((..(((((((.....)))))))((((.........)))))))..))).))))).))))).))).))).))))))))))))).)))))))))))))).)))))).)))).))))).)))))))..))))

Structure
    ca       c     c    g      u              ca             u   u   g     u     a   au   ---------------ug       a 
uaua  augagac auuua uuuu auacaa gaggucacaaucau  uuggcuguuggau uga auc ggugg ugagg ugu  cau                 uuugggc c
||||  ||||||| ||||| |||| |||||| ||||||||||||||  ||||||||||||| ||| ||| ||||| ||||| |||  |||                 ||||||| c
auau  uacucug uaaau aaaa uauguu cuCCAGUGUUAGUG  AAUCGAUAACcug acu uag uuauc auuuu acg  gug                 aaaccug a
    ca       a     a    a      c              -A             u   u   g     u     c   cu   uuguuaacucuuuacaa       a 


Annotation confidence High
Do you think this miRNA is real?

Genome context
scaffold00007: 6003383-6003599 [+]

Database links

Mature atr-miR8614

Accession MIMAT0033906
Description Amborella trichopoda atr-miR8614 mature miRNA
Sequence 161 - CAAUAGCUAAAGUGAUUGUGACC - 183
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089