miRBase entry: atr-MIR156c

Stem-loop atr-MIR156c


Accession
MI0027507
Description
Amborella trichopoda atr-MIR156c precursor miRNA
Gene family
MIPF0000008; MIR156


Sequence

1035 reads, 1767 reads per million, 4 experiments
gaugagcaggggagaugagcuugaaaguagaguugguugUUGACAGAAGAUAGAGAGCACaaaaccaacacaagcaauaggcuuucaugcuucuggaggauaugugcucucuauacuucugccaccaugcccuuagaagcacucuauuucuauucccucucuucccuucccucuc
...(((.((((((((.(((..((.(((((((((.(((((.((.((((((((((((((((((...((..((.(((((...........))))).))..))...)))))))))))).)))))).)).)).))).........))))))))).))....)))))))))))...)))..

Structure
gau   --c        u   --cu  a         --------u   -  U  A      -            aaa  aa  c     auag 
   gag   aggggaga gag    ug aaguagagu         ggu ug UG CAGAAG AUAGAGAGCACa   cc  ca aagca    g
   |||   |||||||| |||    || |||||||||         ||| || || |||||| ||||||||||||   ||  || |||||    c
   cuc   ucccuucu cuc    au uuuaucuca         ccg ac ac gucuuc uaucucucgugu   gg  gu uucgu    u
-cu   ccu        -   ccuu  c         cgaagauuc   u  c  c      a            aua  ag  c     acuu 


Annotation confidence Not enough data
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Genome context
scaffold00061: 4133431-4133605 [+]

Database links

Mature atr-miR156c

Accession MIMAT0033909
Description Amborella trichopoda atr-miR156c mature miRNA
Sequence 40 - UUGACAGAAGAUAGAGAGCAC - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089