miRBase entry: atr-MIR160

Stem-loop atr-MIR160


Accession
MI0027510
Description
Amborella trichopoda atr-MIR160 precursor miRNA
Gene family
MIPF0000032; MIR160


Sequence

432 reads, 2253 reads per million, 4 experiments
ugugaugguuuuuuggagagacaagguggaaaagguaaaugggguuaUGCCUGGCUCCCUGUAUGCCAcucuuuagaguccaaucugagggcugaucggcucaugaggguggcgugcgaggagccaagcauacuuucucucucuagcaaucgaucuuucucucucuaguaaucucucuaucuca
((.(((((....(((((((((.(((((.((...(.((...((((.(((((.(((((((.((((((((((((((..(((.((.(((........))).)))))..)))))))))))))).))))))).)))))...))))....)).)..)).)))))..)))))))))........))))).))

Structure
  u     ----uuuu         -c     g  aaa g  -aau    --u     C       C              ua   u  a   uga 
ug gaugg        uuggagaga  aaggu ga   g ua    gggg   uaUGC UGGCUCC UGUAUGCCAcucuu  gag cc auc   g
|| |||||        |||||||||  ||||| ||   | ||    ||||   ||||| ||||||| ||||||||||||||  ||| || |||    
ac cuauc        gaucucucu  uucua cu   c au    cucu   auacg accgagg gcgugcggugggag  cuc gg uag   g
  u     ucucuaau         cu     g  -aa g  cucu    uuc     a       a              ua   -  c   ucg 


Annotation confidence High
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Genome context
scaffold00092: 1776607-1776790 [-]

Database links

Mature atr-miR160

Accession MIMAT0033912
Description Amborella trichopoda atr-miR160 mature miRNA
Sequence 48 - UGCCUGGCUCCCUGUAUGCCA - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089