Stem-loop atr-MIR166b

Accession

MI0027514

Description

Amborella trichopoda atr-MIR166b precursor miRNA

Sequence

476014 reads, 130181 reads per million, 4 experiments

auggggggaaaaccuuuguguggaaugagguuugauccaagaucucuuuccauauguggaucaugugaacuugcaccuuugcauguuggcaaacccucuucuaugaauagaUCUCGGACCAGGCUUCAUUCCccacacugguuuuccacaauaaauugaaaccccau
((((((((((((((..((((.(((((((((((((.(((.((((((..(((.(((.(.(((...(((.(((.((((....)))).))).))).....))).))))))).)))))).))).))))))))))))).))))..)))))))).(((....)))...))))))

Structure

      --------------        uu    u             a   a      cu   c   u u   --uca   g   u    c 
augggg              ggaaaacc  ugug ggaaugagguuug ucc agaucu  uuc aua g gga     ugu aac ugca c
||||||              ||||||||  |||| ||||||||||||| ||| ||||||  ||| ||| | |||     ||| ||| ||||  
uacccc              ccuuuugg  acac CCUUACUUCGGAC AGG UCUaga  aag uau c ucu     acg uug acgu u
      aaaguuaaauaaca        uc    c             C   C      -u   -   - u   cccaa   g   u    u 

Annotation confidence Not enough data

Genome context

scaffold00004: 1713840-1714006 [+]

Mature atr-miR166b

• Accession: MIMAT0033916
• Description: Amborella trichopoda atr-miR166b mature miRNA
• Sequence: 112 - UCUCGGACCAGGCUUCAUUCC - 132
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089