miRBase entry: atr-MIR319c

Stem-loop atr-MIR319c


Accession
MI0027528
Description
Amborella trichopoda atr-MIR319c precursor miRNA
Gene family
MIPF0000010; MIR159


Sequence

25852 reads, 17263 reads per million, 4 experiments
gaaggagcucucuucaguccagucuaggauggcaguucgaucgaaugcugcugccggguccuucucuuauaaugccuuugauuuuuguuugaaaaggaaacgaaggcuuugugauagaaguacgcgggagcugaaucugguugaccccuucuugccUUGGACUGAAGGGAGCUCCCuc
((.(((((((((((((((((((..(((((.((..((.((((((.((...(((.(((.((.(((((.((((((.(((((((.(((((........))))).))))))).)))))).))))).)).))).)))...)).)))))))).)).)))))..))))))))))))))))))).))

Structure
  a                   uc     u  ca  u      a  gcu   g   g  c     c      u       a     guu 
ga ggagcucucuucaguccag  uagga gg  gu cgaucg au   gcu ccg gu cuucu uuauaa gccuuug uuuuu   u
|| |||||||||||||||||||  ||||| ||  || |||||| ||   ||| ||| || ||||| |||||| ||||||| |||||    
cu CCUCGAGGGAAGUCAGGUU  guucu cc  ca guuggu ua   cga ggc ca gaaga aguguu cggaagc aagga   g
  C                   cc     u  -c  -      c  agu   g   g  u     u      u       a     aaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold00105: 1160459-1160636 [+]

Database links

Mature atr-miR319c

Accession MIMAT0033930
Description Amborella trichopoda atr-miR319c mature miRNA
Sequence 157 - UUGGACUGAAGGGAGCUCCC - 176
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089