Stem-loop atr-MIR535

Accession

MI0027544

Description

Amborella trichopoda atr-MIR535 precursor miRNA

Sequence

4614 reads, 6980 reads per million, 4 experiments

cuugcgUGACAACGAGAGAGAGCACGCuuguggccauucaugugagguacaugccugugcacaugcgugcucuuucucguugucaccuaag
((((.((((((((((((((((((((((.((((..((..((((((...))))))..))..)))).)))))))))))))))))))))).))))

Structure

    c                      u    gc  uu      a 
cuug gUGACAACGAGAGAGAGCACGC ugug  ca  caugug  
|||| |||||||||||||||||||||| ||||  ||  |||||| g
gaau cacuguugcucuuucucgugcg acac  gu  guacau  
    c                      u    gu  cc      g 

Annotation confidence Medium

Genome context

scaffold00087: 73178-73268 [+]

Mature atr-miR535

• Accession: MIMAT0033947
• Description: Amborella trichopoda atr-miR535 mature miRNA
• Sequence: 7 - UGACAACGAGAGAGAGCACGC - 27
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089