miRBase entry: atr-MIR828

Stem-loop atr-MIR828


Accession
MI0027545
Description
Amborella trichopoda atr-MIR828 precursor miRNA
Gene family
MIPF0000544; MIR828


Sequence

117 reads, 5093 reads per million, 4 experiments
cuccucugacuaaaguuucuugcucaaaugaguauuccaaucugcuuucucucccuacauacaagcuugauuuuuggggcaugagaugggcucugUGAUACUCAUUUCAGCAAGCAAccuuacacuggag
((((..((..(((.(((.((((((.(((((((((((.((....((((((((.(((((((........)).....)))))...)))).))))..)).))))))))))).)))))).))).)))))..))))

Structure
    uc  ac   a   u      c           c  aucu    -    --u     -----  uac 
cucc  ug  uaa guu cuugcu aaaugaguauu ca    gcuu ucuc   cccua     ca   a
||||  ||  ||| ||| |||||| ||||||||||| ||    |||| ||||   |||||     ||    
gagg  ac  auu cAA GAACGA UUUACUCAUAG gu    cggg agag   ggggu     gu   a
    uc  --   c   C      C           U  --cu    u    uac     uuuua  ucg 


Annotation confidence Not enough data
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Genome context
scaffold00009: 8165619-8165748 [+]

Database links

Mature atr-miR828

Accession MIMAT0033948
Description Amborella trichopoda atr-miR828 mature miRNA
Sequence 96 - UGAUACUCAUUUCAGCAAGCAA - 117
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089