miRBase entry: atr-MIR8558b

Stem-loop atr-MIR8558b


Accession
MI0027546
Description
Amborella trichopoda atr-MIR8558b precursor miRNA


Sequence

21765 reads, 24204 reads per million, 4 experiments
gugcgaagggggcucuugcaggcggaggacaugguggaauggugaagaggcgguaugguagccguugguguauggcugggcagaauuuggaaacccuaguuuugguuuuuacgggaaaccaggauuaggaaacucuaauuuuggcucuuaccggaaauccaguauuaggagaaccuaauuugggugucuuacaggaaaccauggUUUCCGAUCCCGCCCAUGCCGUguacccauggcuucuauccccuuuucauaacccacuuaaguuucccgaucccgcccuugccguuuacgcac
(((((.(((.(((....((.(((((.((((..(((((....(((((((((.((.((((.((((((.(((((((((((((((.....((((((((((((((((((((((((...))))))))))))))))............(((.((((...(((.((((((.((((((....)))))))))))).)))...))))..)))..))))))))....))))).)))))))))).)))))).)))))))))))))))...)))))...)))).)))..)).))....))).))).)))))

Structure
     a   g   ucuu  a  --   a    -au     aaug         c  u    u      u          -     agaau        ccuaguuuugguuuuuacgggaaaccaggauuaggaaacucuaauuu   -c    acc   a      u      a 
gugcg agg ggc    gc gg  cgg ggac   ggugg    gugaagagg gg augg agccgu gguguauggc ugggc     uuggaaac                                               ugg  ucuu   gga auccag auuagg g
||||| ||| |||    || ||  ||| ||||   |||||    ||||||||| || |||| |||||| |||||||||| |||||     ||||||||                                               |||  ||||   ||| |||||| ||||||  
cacgc uuu ccg    cg cc  gcc uuug   ucacc    uacuuuucc cc uauc ucggua ccaugUGCCG ACCCG     AGCCUUUg                                               acc  agga   ucu uggguu uaaucc a
     a   g   uucc  c  ua   c    aau     -caa         -  -    u      c          U     -CCCU        ---------------------------------------------gu   aa    cau   g      -      a 


Annotation confidence High
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Genome context
scaffold00017: 2879753-2880049 [+]

Database links

Mature atr-miR8558b

Accession MIMAT0033949
Description Amborella trichopoda atr-miR8558b mature miRNA
Sequence 205 - UUUCCGAUCCCGCCCAUGCCGU - 226
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089