Stem-loop esi-MIR8619

Accession

MI0027551

Description

Ectocarpus siliculosus esi-MIR8619 precursor miRNA

Sequence

guagCCAAGAUCGGGUGCACCCGGUGGAAagacggccaaggccagguagggccgggugccggccaaucagaugguggcaugcggucgcucccagcagcgucuagcagggguacccgauuauggccguguucugaccggguguacccgauuuuggccac
...((((((((((((((((((((((.(.((.(((((((.((.(.((((.(((((.((((((.(((......))))))))).)))))..((((.((........)).)))))))).).)).))))))).)).).))))))))))))))))))))))...

Structure

gua                      G A  g       a  c a    -----------------------g     g      g   au 
   gCCAAGAUCGGGUGCACCCGGU G Aa acggcca gg c ggua                        ggccg gugccg cca  c
   |||||||||||||||||||||| | || ||||||| || | ||||                        ||||| |||||| |||   
   cgguuuuagcccaugugggcca u uu ugccggu uu g ccau                        cuggc uacggu ggu  a
cac                      g c  g       a  a c    ggggacgaucugcgacgacccucg     g      -   ag 

Annotation confidence Not enough data

Genome context

sctg_149: 253472-253629 [-]

Mature esi-miR8619

• Accession: MIMAT0033954
• Description: Ectocarpus siliculosus esi-miR8619 mature miRNA
• Sequence: 5 - CCAAGAUCGGGUGCACCCGGUGGAA - 29
• Evidence: experimental ; qPCR [1]

References

1. PubMed ID: 24078085
   Computational prediction and experimental validation of microRNAs in the brown alga Ectocarpus siliculosus
   "Billoud B, Nehr Z, Le Bail A, Charrier B"
   "Nucleic Acids Res (2014) 42:417-429