Stem-loop esi-MIR8620

Accession

MI0027552

Description

Ectocarpus siliculosus esi-MIR8620 precursor miRNA

Sequence

gcggcagcggcugcaggaacggcggcggccggcgagggcgccgcggugaccgaagagcccccuccgcgccgacaccggaaggaucugccugucuaacaacgucguguggaucaaccgccgcaccgccgugccggcgccgguaccggccagcggggggggcucuucggucaccgcggcgcccucgccggccgccgccguUCCUGCAGCCGCUGCCGC
(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((..(((((...(((((((.((.(.......).)).)))))))...((((((((....))).))))))))))..))))..)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))

Structure

                                                                   --    ac     ---------------------aag       c  u ua 
gcggcagcggcugcaggaacggcggcggccggcgagggcgccgcggugaccgaagagcccccuccgc  gccg  accgg                        gaucugc ug c  a
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||  |||||                        ||||||| || |  c
CGCCGUCGCCGACGUCCUugccgccgccggccgcucccgcggcgccacuggcuucucggggggggcg  cggc  uggcc                        cuaggug gc g  a
                                                                   ac    ca     gcggccgugccgccacgccgccaa       u  u ca 

Annotation confidence Not enough data

Genome context

sctg_209: 28542-28757 [-]

Mature esi-miR8620

• Accession: MIMAT0033955
• Description: Ectocarpus siliculosus esi-miR8620 mature miRNA
• Sequence: 199 - UCCUGCAGCCGCUGCCGC - 216
• Evidence: experimental ; qPCR [1]

References

1. PubMed ID: 24078085
   Computational prediction and experimental validation of microRNAs in the brown alga Ectocarpus siliculosus
   "Billoud B, Nehr Z, Le Bail A, Charrier B"
   "Nucleic Acids Res (2014) 42:417-429