Stem-loop esi-MIR8621

Accession

MI0027553

Description

Ectocarpus siliculosus esi-MIR8621 precursor miRNA

Sequence

ACUUCGCCGCCGGCGCAGuugccgucugcucuagugaacucaguccaggauggaaacgccucuaugcugcgcuccgugggguacagccuguaccguacagguuguaccccacggagcgcaacauagaggcguucccgucaggaacgagggucaccacagcgacggcagcugugcuggcggcgaagu
((((((((((((((((((((((((((.(((...((((.(((..(((..(((((.((((((((((((.(((((((((((((((((((((((((...))))))))))))))))))))))))).)))))))))))).))))).)))..)))..))))...)))))))))))))))))))))))))))))

Structure

                          u   cua    -a   ag   ag     a            c                         c 
ACUUCGCCGCCGGCGCAGuugccguc gcu   guga  cuc  ucc  gaugg aacgccucuaug ugcgcuccgugggguacagccugua  
|||||||||||||||||||||||||| |||   ||||  |||  |||  ||||| |||||||||||| ||||||||||||||||||||||||| c
ugaagcggcggucgugucgacggcag cga   cacu  gag  agg  cugcc uugcggagauac acgcgaggcaccccauguuggacau  
                          -   cac    gg   ca   -a     c            a                         g 

Annotation confidence Not enough data

Genome context

sctg_414: 84877-85062 [-]

Mature esi-miR8621

• Accession: MIMAT0033956
• Description: Ectocarpus siliculosus esi-miR8621 mature miRNA
• Sequence: 1 - ACUUCGCCGCCGGCGCAG - 18
• Evidence: experimental ; qPCR [1]

References

1. PubMed ID: 24078085
   Computational prediction and experimental validation of microRNAs in the brown alga Ectocarpus siliculosus
   "Billoud B, Nehr Z, Le Bail A, Charrier B"
   "Nucleic Acids Res (2014) 42:417-429