Stem-loop esi-MIR8622a

Accession

MI0027554

Description

Ectocarpus siliculosus esi-MIR8622a precursor miRNA

Gene family

MIPF0001931; MIR8622

Sequence

guccgaaaucugcgccggaaccaagcggcauccaacauuugucacagccaugcucaccgccacggaccguaaaccccugaacggaggggcgucagcaguagcuaguggcaucaguuacugcuguaaacccguagaguucaggagauuggggucgguggcggcgagcauggcugugacaaaauuggaugccgcCUUGGUUCCGGCGCAGAUUUCGgac
(((((((((((((((((((((((((((((((((((..((((((((((((((((((.(((((((.((((.(((.(.(((((((...(((....(((((((((((.(......))))))))))))....))).....))))))).).))).)))).))))))).)))))))))))))))))).)))))))))).)))))))))))))))))))))))))

Structure

                         -          ca                  a       g    g   a c       --gga   gcgu           a ug 
guccgaaaucugcgccggaaccaag cggcauccaa  uuugucacagccaugcuc ccgccac gacc uaa c ccugaac     ggg    cagcaguagcu g  g
||||||||||||||||||||||||| ||||||||||  |||||||||||||||||| ||||||| |||| ||| | |||||||     |||    ||||||||||| |   
cagGCUUUAGACGCGGCCUUGGUUC gccguagguu  aaacagugucgguacgag ggcggug cugg guu g ggacuug     ccc    gucgucauuga c  c
                         c          -a                  c       g    g   a a       agaug   aaau           - ua 

Annotation confidence Not enough data

Genome context

sctg_179: 234299-234515 [+]

Mature esi-miR8622a

• Accession: MIMAT0033957
• Description: Ectocarpus siliculosus esi-miR8622a mature miRNA
• Sequence: 193 - CUUGGUUCCGGCGCAGAUUUCG - 214
• Evidence: experimental ; qPCR [1]

References

1. PubMed ID: 24078085
   Computational prediction and experimental validation of microRNAs in the brown alga Ectocarpus siliculosus
   "Billoud B, Nehr Z, Le Bail A, Charrier B"
   "Nucleic Acids Res (2014) 42:417-429