Stem-loop esi-MIR8623c

Accession

MI0027555

Description

Ectocarpus siliculosus esi-MIR8623c precursor miRNA

Gene family

MIPF0001961; MIR8623

Sequence

gucccaugggacagcccuggggacgucccacgugucucauggugucccaugggacagcuagggccgucccauggugucccaugagacagcuagggccgucccauggugucccaugagacagauagggccGUCCCAUGGUGUCCCAUGGGAC
(((((((((((((..((..((((((.(((...((((((((((.(.((((((((((.(((..(((.(((.(((((....))))).))).)))..))).))))))))).).)))))))))))....))).))))))..)))))))))))))))

Structure

             gc  ug      u   -acg          u u -         a   ag   c   c     u 
gucccaugggaca  cc  gggacg ccc    ugucucaugg g c ccaugggac gcu  ggc guc caugg g
|||||||||||||  ||  |||||| |||    |||||||||| | | ||||||||| |||  ||| ||| |||||  
CAGGGUACCCUGU  GG  CCCUGc ggg    acagaguacc c g gguacccug cgg  ucg cag guacc u
             --  UA      c   auag          - u u         c   ga   a   a     c 

Annotation confidence Not enough data

Genome context

sctg_458: 10230-10380 [-]

Mature esi-miR8623c

• Accession: MIMAT0033958
• Description: Ectocarpus siliculosus esi-miR8623c mature miRNA
• Sequence: 130 - GUCCCAUGGUGUCCCAUGGGAC - 151
• Evidence: experimental ; qPCR [1]

References

1. PubMed ID: 24078085
   Computational prediction and experimental validation of microRNAs in the brown alga Ectocarpus siliculosus
   "Billoud B, Nehr Z, Le Bail A, Charrier B"
   "Nucleic Acids Res (2014) 42:417-429