Stem-loop esi-MIR8622b

Accession

MI0027556

Description

Ectocarpus siliculosus esi-MIR8622b precursor miRNA

Gene family

MIPF0001931; MIR8622

Sequence

cgaaaucugcgccggaaccaagcggcauccaacauuugucacagccgugcucaccgccacggacaguaaaccccugaacgggguugucaguaguagcuauuaguggcaucagcuacugcuguaaacccacaguucaggagauuggggucaguggcagcgagcacggcugcgacaaaugauggauaccgCUUGGUUCCGGCGCAGAUUUCG
(((((((((((((((((((((((((.(((((.((((((((.(((((((((((.(.(((((.(((..(((.(.(((((((((((((..(((((((((((............)))))))))))..))))).).))))))).).)))..))).))))).).))))))))))).)))))))).))))).)))))))))))))))))))))))))

Structure

                         c     a        a           a c     g   ag   a c       - -     gu           auuag 
cgaaaucugcgccggaaccaagcgg aucca cauuuguc cagccgugcuc c gccac gac  uaa c ccugaac g ggguu  caguaguagcu     u
||||||||||||||||||||||||| ||||| |||||||| ||||||||||| | ||||| |||  ||| | ||||||| | |||||  |||||||||||      
GCUUUAGACGCGGCCUUGGUUCgcc uaggu guaaacag gucggcacgag g cggug cug  guu g ggacuug c cccaa  gucgucaucga     g
                         a     a        c           c a     a   gg   a a       a a     au           cuacg 

Annotation confidence Not enough data

Genome context

sctg_0: 3431161-3431370 [+]

Mature esi-miR8622b

• Accession: MIMAT0033959
• Description: Ectocarpus siliculosus esi-miR8622b mature miRNA
• Sequence: 189 - CUUGGUUCCGGCGCAGAUUUCG - 210
• Evidence: experimental ; qPCR [1]

References

1. PubMed ID: 24078085
   Computational prediction and experimental validation of microRNAs in the brown alga Ectocarpus siliculosus
   "Billoud B, Nehr Z, Le Bail A, Charrier B"
   "Nucleic Acids Res (2014) 42:417-429