Stem-loop esi-MIR8623a

Accession

MI0027557

Description

Ectocarpus siliculosus esi-MIR8623a precursor miRNA

Gene family

MIPF0001961; MIR8623

Sequence

cucaugggcgcccaugagaaucaauauggugucucguggugccccaugggacaccauggggucucaugacauacaaugagacuuaccccaugacacaccauggggugccaugggauaccaugagauggcugucucauaaaauacuccagggggugccaugggaggacaugagacaccauuacauUCUCAUGGGCGCCCAUGGG
(((((((((((((((((((((...(((((((((((((((((((((((((.....(((((((((((((........))))))....))))))).....))))))))))))))))))))))))).(((((.((((((((......((((..((....))...))))...)))))))))))))..)))))))))))))))))))))

Structure

                     ---------------------------------------------------------caa                         gacac       ----      gac 
cucaugggcgcccaugagaau                                                            uauggugucucguggugccccaugg     caugggg    ucucau   a
|||||||||||||||||||||                                                            |||||||||||||||||||||||||     |||||||    ||||||    
GGGUACCCGCGGGUACUCUua                                                            guaccauaggguaccgugggguacc     guacccc    agagua   u
                     cauuaccacagaguacaggaggguaccgugggggaccucauaaaauacucugucgguaga                         acaca       auuc      aca 

Annotation confidence Not enough data

Genome context

sctg_434: 90364-90566 [-]

Mature esi-miR8623a

• Accession: MIMAT0033960
• Description: Ectocarpus siliculosus esi-miR8623a mature miRNA
• Sequence: 185 - UCUCAUGGGCGCCCAUGGG - 203
• Evidence: experimental ; qPCR [1]

References

1. PubMed ID: 24078085
   Computational prediction and experimental validation of microRNAs in the brown alga Ectocarpus siliculosus
   "Billoud B, Nehr Z, Le Bail A, Charrier B"
   "Nucleic Acids Res (2014) 42:417-429