Stem-loop esi-MIR8624a

Accession

MI0027558

Description

Ectocarpus siliculosus esi-MIR8624a precursor miRNA

Gene family

MIPF0002113; MIR8624

Sequence

acacacugauucucggaagcuaucaacuuugcucguccucgaugaauugguccugauaugugcgugaacguuuuuugguggaagcaagagauuugggucugauucggcugaagaaccggccgcaggcuccaacuucaagcuuuucgaaaacacgcucacgcacauaucgggaccaauucaucgaggacaagcaAAGUUGAUAGCUUCCGAGAAUCAGUgugu
(((((((((((((((((((((((((((((((((.(((((((((((((((((((((((((((((((((.(((.((((.(.((((((..(((..(((((((((...((((((......))))))))))).)))).)))..))))))).)))).))).))))))))))))))))))))))))))))))))).)))))))))))))))))))))))))))))))))

Structure

                                 c                                 a   u    g u      aa   au    -     auu      aa 
acacacugauucucggaagcuaucaacuuugcu guccucgaugaauugguccugauaugugcguga cgu uuuu g ggaagc  gag  uugg gucug   cggcug  g
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||| | ||||||  |||  |||| |||||   ||||||   
ugugUGACUAAGAGCCUUCGAUAGUUGAAacga caggagcuacuuaaccagggcuauacacgcacu gca aaaa c uuuucg  cuu  aacc cggac   gccggc  a
                                 a                                 c   c    g -      aa   -c    u     ---      ca 

Annotation confidence Not enough data

Genome context

sctg_22: 195915-196136 [-]

Mature esi-miR8624a

• Accession: MIMAT0033961
• Description: Ectocarpus siliculosus esi-miR8624a mature miRNA
• Sequence: 194 - AAGUUGAUAGCUUCCGAGAAUCAGU - 218
• Evidence: experimental ; qPCR [1]

References

1. PubMed ID: 24078085
   Computational prediction and experimental validation of microRNAs in the brown alga Ectocarpus siliculosus
   "Billoud B, Nehr Z, Le Bail A, Charrier B"
   "Nucleic Acids Res (2014) 42:417-429