miRBase entry: esi-MIR8627

Stem-loop esi-MIR8627


Accession
MI0027562
Description
Ectocarpus siliculosus esi-MIR8627 precursor miRNA


Sequence

ccgcccugaagcgccagccgcgcgacgcaagccgcaaucgaaaagguaagccagcgcgacaagcaacugaaucaacgggguuguccaucucguugaccguugcuugucagucuggcuuaccuuuucgauugcgggugaugucgcguggCUGGCGCCCCAGGGCGG
((((((((..(((((((((((((((((..(.(((((((((((((((((((((((.((((((((((((.(..((((((((((.....))))))))))).)))))))))).))))))))))))))))))))))))).)..)))))))))))))))))..))))))))

Structure
        aa                 ca g                       c  -          u aa          u 
ccgcccug  gcgccagccgcgcgacg  a ccgcaaucgaaaagguaagccag gc gacaagcaac g  ucaacggggu g
||||||||  |||||||||||||||||  | ||||||||||||||||||||||| || |||||||||| |  |||||||||| u
GGCGGGAC  CGCGGUCggugcgcugu  u ggcguuagcuuuuccauucgguc ug cuguucguug c  aguugcucua c
        CC                 ag g                       -  a          c --          c 


Annotation confidence Not enough data
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Genome context
sctg_218: 141181-141345 [-]

Database links

Mature esi-miR8627

Accession MIMAT0033965
Description Ectocarpus siliculosus esi-miR8627 mature miRNA
Sequence 149 - CUGGCGCCCCAGGGCGG - 165
Evidence experimental
qPCR [1]

References

  1. PubMed ID: 24078085
    Computational prediction and experimental validation of microRNAs in the brown alga Ectocarpus siliculosus
    "Billoud B, Nehr Z, Le Bail A, Charrier B"
    "Nucleic Acids Res (2014) 42:417-429