Stem-loop esi-MIR8629

Accession

MI0027564

Description

Ectocarpus siliculosus esi-MIR8629 precursor miRNA

Sequence

ugaagcuaaauaguggugacugcuguggggucuaugauugcgagcaaaaguaagaauccguauggagaauccgcaggagaugcuauacgauaguuuggcgauaguuuggccaaacuaucguauagaauccucgacggguucuccauacggauauuuacuuuugcucgcauggauugacaucuucucagcacacacagaccCCACAGCAGUCACCACUAGCUUCAA
(((((((....((((((((((((((((((((((.((..((((((((((((((((.(((((((((((((((((((((((....(((((((((((((((((.(.....).)))))))))))))))))..)))).).)))))))))))))))))).))))))))))))))))((..((((.......))))..)))).))))))))))))))))))))))))))))).

Structure

-       aaau                      a  ---------------------au                a                  - -    gaug                 g u 
 ugaagcu    aguggugacugcuguggggucu ug                       ugcgagcaaaaguaag auccguauggagaauccg c agga    cuauacgauaguuuggc a a
 |||||||    |||||||||||||||||||||| ||                       |||||||||||||||| |||||||||||||||||| | ||||    ||||||||||||||||| | g
 ACUUCGA    UCACCACUGACGACACCccaga ac                       acgcucguuuucauuu uaggcauaccucuugggc g uccu    gauaugcuaucaaaccg u u
A       ----                      c  acacgacucuucuacaguuaggu                a                  a c    --aa                 g u 

Annotation confidence Not enough data

Genome context

sctg_300: 159636-159860 [+]

Mature esi-miR8629

• Accession: MIMAT0033967
• Description: Ectocarpus siliculosus esi-miR8629 mature miRNA
• Sequence: 201 - CCACAGCAGUCACCACUAGCUUCAA - 225
• Evidence: experimental ; qPCR [1]

References

1. PubMed ID: 24078085
   Computational prediction and experimental validation of microRNAs in the brown alga Ectocarpus siliculosus
   "Billoud B, Nehr Z, Le Bail A, Charrier B"
   "Nucleic Acids Res (2014) 42:417-429