miRBase entry: esi-MIR8623d

Stem-loop esi-MIR8623d


Accession
MI0027565
Description
Ectocarpus siliculosus esi-MIR8623d precursor miRNA
Gene family
MIPF0001961; MIR8623


Sequence

cucaugggcgcccaugagaaucaauauggugucucguggugccccaugggacaccauggggucucaugacauacaaugagacuuaccccaugacacaccauagggugccaugggauaccaugagauggcugucucauaauacuccagggggugccaugggaggacaugagacaccauuacauUCUCAUGGGCGCCCAUGGG
(((((((((((((((((((((...((((((((((((((((((((.((((.....(((((((((((((........))))))....))))))).....)))).)))))))))))))))))))).(((((.((((((((....((((..((....))...))))...)))))))))))))..)))))))))))))))))))))

Structure
                     -------------------------------------------------------caa                    c    gacac       ----      gac 
cucaugggcgcccaugagaau                                                          uauggugucucguggugccc augg     caugggg    ucucau   a
|||||||||||||||||||||                                                          |||||||||||||||||||| ||||     |||||||    ||||||    
GGGUACCCGCGGGUACUCUua                                                          guaccauaggguaccguggg uacc     guacccc    agagua   u
                     cauuaccacagaguacaggaggguaccgugggggaccucauaauacucugucgguaga                    a    acaca       auuc      aca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
sctg_441: 1050-1250 [-]

Database links

Mature esi-miR8623d

Accession MIMAT0033968
Description Ectocarpus siliculosus esi-miR8623d mature miRNA
Sequence 183 - UCUCAUGGGCGCCCAUGGG - 201
Evidence experimental
qPCR [1]

References

  1. PubMed ID: 24078085
    Computational prediction and experimental validation of microRNAs in the brown alga Ectocarpus siliculosus
    "Billoud B, Nehr Z, Le Bail A, Charrier B"
    "Nucleic Acids Res (2014) 42:417-429