Stem-loop esi-MIR8624b

Accession

MI0027568

Description

Ectocarpus siliculosus esi-MIR8624b precursor miRNA

Gene family

MIPF0002113; MIR8624

Sequence

uucucggaagcuaucaacuuugcuuguccucgaugaacuggucccgaaaugugcgugagcguguggucgaaaaagcuugaaguuggagccugcagucaguucuucggccgaaucagaccccaaucucuugcuuccaccgaaacacgcucacguacauaucgggaccaguucaucgaggacaAGCAAAGUUGAUAGCUUCCGAGaa
.((((((((((((((((((((((((((((((((((((((((((((((.((((((((((((((((..(((...((((..((.(((((.(.((((.(((........))).)...))).).))))).))..))))....))).)))))))))))))))).)))))))))))))))))))))))))))))))))))))))))))))).

Structure

u                                              a                gg   -aaa    uu  a     a c   --- a   agu 
 ucucggaagcuaucaacuuugcuuguccucgaugaacuggucccga augugcgugagcgugu  ucg    aagc  ga guugg g cug   c guc   u
 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||    ||||  || ||||| | |||   | |||    
 aGAGCCUUCGAUAGUUGAAACGAacaggagcuacuugaccagggcu uacaugcacucgcaca  agc    uucg  cu uaacc c gac   g cgg   c
a                                              a                -a   cacc    uu  c     c a   uaa c   cuu 

Annotation confidence Not enough data

Genome context

sctg_294: 29358-29562 [+]

Mature esi-miR8624b

• Accession: MIMAT0033971
• Description: Ectocarpus siliculosus esi-miR8624b mature miRNA
• Sequence: 182 - AGCAAAGUUGAUAGCUUCCGAG - 203
• Evidence: experimental ; qPCR [1]

References

1. PubMed ID: 24078085
   Computational prediction and experimental validation of microRNAs in the brown alga Ectocarpus siliculosus
   "Billoud B, Nehr Z, Le Bail A, Charrier B"
   "Nucleic Acids Res (2014) 42:417-429