Stem-loop sly-MIR164a

Accession

MI0027570

Description

Solanum lycopersicum sly-MIR164a precursor miRNA

Gene family

MIPF0000045; MIR164

Literature search

17 open access papers mention sly-MIR164a
(117 sentences)

Sequence

ucgagaUGGAGAAGCAGGGCACGUGCAuuacuaacucauacgcaagauuuaucgauguuucgaaaauucugcuaucauaguacuguauuuuacagcaaauaguguuuguacuuuacauguaugugauaaaaugaugaguuaguuauuCAUGUGCCUGUUUUCCCCAUCauga
(((.(((((.((((..(((((((((.((.((((((((((..(((.(((((.((((....))))))))).)))(((((((.(((((((...(((((((.....)).)))))...)))).)))))))))).....)))))))))).)).)))))))))..)))).))))).)))

Structure

   a     A    CA         C  u          acgcaagauuuaucgauguuucgaaaauucugc       g   -    uuu     -  a 
ucg gaUGG GAAG  GGGCACGUG Au acuaacucau                                 uaucaua uac ugua   uacag ca a
||| ||||| ||||  ||||||||| || ||||||||||                                 ||||||| ||| ||||   ||||| || u
agu CUACC CUUU  UCCGUGUAC ua ugauugagua                                 auagugu aug acau   auguu gu a
   a     C    UG         u  u          ----------------------------guaaa       -   u    uuc     u  g 

Annotation confidence Not enough data

Genome context

chr9: 7197971-7198142 [+]

Mature sly-miR164a-5p

• Accession: MIMAT0033973
• Description: Solanum lycopersicum sly-miR164a-5p mature miRNA
• Sequence: 7 - UGGAGAAGCAGGGCACGUGCA - 27
• Evidence: experimental ; Northern [1]

Mature sly-miR164a-3p

• Accession: MIMAT0033974
• Description: Solanum lycopersicum sly-miR164a-3p mature miRNA
• Sequence: 148 - CAUGUGCCUGUUUUCCCCAUC - 168
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 24085581
   The tomato NAC transcription factor SlNAM2 is involved in flower-boundary morphogenesis
   Hendelman A, Stav R, Zemach H, Arazi T
   J Exp Bot (2013) 64:5497-5507