miRBase entry: sly-MIR164b

Stem-loop sly-MIR164b


Accession
MI0027571
Description
Solanum lycopersicum sly-MIR164b precursor miRNA
Gene family
MIPF0000045; MIR164

Literature search
18 open access papers mention sly-MIR164b
(112 sentences)

Sequence

guUGGAGAAGCAGGGCACGUGCAaauucuuguauucgacaauauaugcauuacuaaugguaaugcaugaauuuugCACGUGUUCUCCUUCUCCAAC
((((((((((.(((((((((((((((((((((.....))))...((((((((((...))))))))))))).)))))))))))))).))))))))))

Structure
          C              -   uuguauucgacaauau          a 
guUGGAGAAG AGGGCACGUGCAaa uuc                augcauuacu  
|||||||||| |||||||||||||| |||                |||||||||| a
CAACCUCUUC UCUUGUGCACguuu aag                uacguaaugg  
          C              u   ----------------          u 


Annotation confidence Not enough data
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Genome context
chr1: 89971259-89971354 [+]

Database links

Mature sly-miR164b-5p

Accession MIMAT0033975
Description Solanum lycopersicum sly-miR164b-5p mature miRNA
Sequence 3 - UGGAGAAGCAGGGCACGUGCA - 23
Evidence experimental
Northern [1]

Mature sly-miR164b-3p

Accession MIMAT0033976
Description Solanum lycopersicum sly-miR164b-3p mature miRNA
Sequence 76 - CACGUGUUCUCCUUCUCCAAC - 96
Evidence experimental
Northern [1]

References

  1. PubMed ID: 24085581
    The tomato NAC transcription factor SlNAM2 is involved in flower-boundary morphogenesis
    Hendelman A, Stav R, Zemach H, Arazi T
    J Exp Bot (2013) 64:5497-5507