miRBase entry: gra-MIR167b

Stem-loop gra-MIR167b


Accession
MI0027579
Description
Gossypium raimondii gra-MIR167b precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
2 open access papers mention gra-MIR167b
(11 sentences)

Sequence

uuugagagguugaagcugccagcaugaucugguaaugggccuagcuaucacccuuuuuuuauuuuuguauucuuaggccucuuuuauaguuuuuguacagguauguuaaguuagauuguuuaugaccgguuuuagaucaaaauucuuuugaguccaagaugaguuuuuuucuuucuuucuuucaggagaaguuuaucaaucauuugguuaagggcuuuuagagucuuagauuaccaggcaacuuagauguguuuauaaagaacccugccuguacuuaagcuucauagguugucgguucauacuaUCAGAUCAUCUUGCAGCUUCAaucacucacu
..((((.((((((((((((.((.((((((((((((((((((..................(((....)))......(((..(((....(((((..(((((((((.(((....(((((.(((((((.(((((....((((....((((((((((...((((.(((.....)))..))))...))))))))))....(((((....)))))..(((((((...))))))).))))))).))))...)))))..))))).....)))..)))))))))..)))))....)))..))))))))))..))))))))))))).)))))))))))).))))..

Structure
uu    a            c  c           --       uagcuaucacccuuuuuuuauuuuuguauucuua   cu   uuau     uu         -u   -aagu     -u     ---  a  -   uuua    ----------------------------------aaaa          ucc    -u   u 
  ugag gguugaagcugc ag augaucuggua  augggcc                                  ggc  cuu    aguuu  guacaggua  guu     uagau  guuua   ug cc ggu    gauc                                      uucuuuugag   aaga  gag u
  |||| |||||||||||| || |||||||||||  |||||||                                  |||  |||    |||||  |||||||||  |||     |||||  |||||   || || |||    ||||                                      ||||||||||   ||||  ||| u
  acuc cuaACUUCGACG UC UACUAGACUau  uacuugg                                  cug  gga    ucgaa  cauguccgu  caa     auuug  uagau   ac gg cca    uuag                                      aagaggacuu   uucu  cuu u
uc    a            U  -           ca       ----------------------------------   uu   uacu     uu         cc   gaaau     ug     uca  -  a   ----    auucugagauuuucgggaauugguuuacuaacuauuug          ucu    uu   u 


Annotation confidence Not enough data
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Genome context
chr9: 11531311-11531645 [+]

Database links

Mature gra-miR167b

Accession MIMAT0033984
Description Gossypium raimondii gra-miR167b mature miRNA
Sequence 305 - UCAGAUCAUCUUGCAGCUUCA - 325
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629