Stem-loop gra-MIR8636

Accession

MI0027581

Description

Gossypium raimondii gra-MIR8636 precursor miRNA

Sequence

ggcugucgacCGGACCCUCUAACAGUGGAGGuguuaugcuaaguggugggccaaaaaugcuaaaaacauuuccuugguggauuaggcgcugcagucaaacucuguaaaccccuuuggguuuuccuuggaguagggagacaaaacacgggucuaaaaccgagcauagacacccgggcacaauaccuccauuguuugaggguccgaucagcugcuc
(((.((.((.(((((((((.(((((((((((((((.((((..(.(((((((.......)))...........((((((...((((((.((((((.......))))).((((....))))((((((((...))))))))........).)))))).))))))......))))).)))).))))))))))))))).))))))))).)).)).))).

Structure

-   u  c  c         U               a    aa u    ggccaaaaaugcuaaaaacauuuc      gga      g ugcagucaaacucuguaaaccccuuugggu        g 
 ggc gu ga CGGACCCUC AACAGUGGAGGuguu ugcu  g ggug                        cuuggu   uuaggc c                              uuuccuug  
 ||| || || ||||||||| ||||||||||||||| ||||  | ||||                        ||||||   |||||| |                              |||||||| a
 ucg cg cu gccugggag uuguuaccuccauaa acgg  c ccac                        gagcca   aaucug g                              agagggau  
c   u  a  a         u               c    -g -    ------------------agauac      --a      g ----------------------cacaaaac        g 

Annotation confidence Not enough data

Genome context

chr9: 70463171-70463384 [+]

Mature gra-miR8636

• Accession: MIMAT0033986
• Description: Gossypium raimondii gra-miR8636 mature miRNA
• Sequence: 11 - CGGACCCUCUAACAGUGGAGG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629