Stem-loop gra-MIR8637

Accession

MI0027582

Description

Gossypium raimondii gra-MIR8637 precursor miRNA

Sequence

aguaccauggAGGCCCCUGUAUUGAGAGUCGGAUugcuuauugccccuucuacucaaaaaaugggcaaauuaguuccuguacguaaggucaaagagcaagcuagucuuucuguuaaaaauuacauccaguuuuacaguuaaaaacuggucccuauaugucagcguaaaguauacgugguaugccaaauguaacaguuuaguuauuuugucagccauaucaauuuuuaacaauagaaaugaaagaaauuuuuaacagaaagaaccaauuuucucuuugaucucacuuaaaaggauugauuuagcuauuuuuuaaguaaagagggcaaaaugcaaucugacucuuaguacaugggucuccaugauacuu
((((.(((((((((((.((((((((((((((((((((...(((((((((.((((.(((((((((..((((((((.(((.((.((.(((((((((((.(((....(((((((((((((((((....((((((((.......))))))))...((.((((....)))).)).....(((((.((.((((.(((((......))))))))).))))))).(((.((((((....)))))))))....))))))))))))))))).....))).))))))))))).)).))..)))))))))))..))))))))).))))))).))))))...)))))))))))))))))))).))))))))))).)))).

Structure

-    c           C                    uua      -   c    c         gc        u   -g  c  a           c   -cuag                 acauccaguuuuacaguuaaaaacuggucccuauaugucagcguaaaguauac     a  c    u     ag 
 agua cauggAGGCCC UGUAUUGAGAGUCGGAUugc   uugccc cuu uacu aaaaaaugg  aaauuagu ccu  ua gu aggucaaagag aag     ucuuucuguuaaaaauu                                                     guggu ug caaa guaac  u
 |||| ||||||||||| ||||||||||||||||||||   |||||| ||| |||| |||||||||  |||||||| |||  || || ||||||||||| |||     |||||||||||||||||                                                     ||||| || |||| |||||   
 ucau guaccucuggg acaugauucucagucuaacg   aacggg gaa auga uuuuuuauc  uuuaguua gga  au ca ucuaguuucuc uuu     agaaagacaauuuuuaa                                                     uaccg ac guuu uauug  u
u    a           u                    uaa      a   -    a         ga        -   aa  u  c           u   aacca                 -------------------------agaaaguaaagauaacaauuuuuaacua     -  u    -     au 

Annotation confidence Not enough data

Genome context

chr1: 10368597-10368963 [+]

Mature gra-miR8637

• Accession: MIMAT0033987
• Description: Gossypium raimondii gra-miR8637 mature miRNA
• Sequence: 11 - AGGCCCCUGUAUUGAGAGUCGGAU - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629