Stem-loop gra-MIR8639i

Accession

MI0027590

Description

Gossypium raimondii gra-MIR8639i precursor miRNA

Gene family

MIPF0001883; MIR8639

Sequence

guaauggaagacuuguuuaauucuacuuauguuuaacaacucuuuuaagcuuccaauauauacuaaucagauuuuaguaaugaaacugacuuuuauauuuaaucauuugaaaaauauaaaaaaauuuagacaaaaacaacuuucauauuugucacuuaaaagaauuguUAAACAUAAGUAGAAUUAAACAAGucuuccauua
.((((((((((((((((((((((((((((((((((((((.(((((((((.................((((.(((((....))))))))).((((((((((..((....)).)))))))))).......((((((.............)))))).))))))))).))))))))))))))))))))))))))))))))))))))

Structure

g                                      c         cuuccaauauauacuaaucagauuuuaguaaugaaacugac          aa  a 
 uaauggaagacuuguuuaauucuacuuauguuuaacaa ucuuuuaag                                         uuuuauauuu  uc u
 |||||||||||||||||||||||||||||||||||||| |||||||||                                         ||||||||||  ||  
 auuaccuucuGAACAAAUUAAGAUGAAUACAAAUuguu agaaaauuc                                         aaaauauaaa  ag u
-                                      a         --------acuguuuauacuuucaacaaaaacagauuuaaa          -a  u 

Annotation confidence Not enough data

Genome context

chr7: 20243036-20243237 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gra-MIR8639i

Mature gra-miR8639i

• Accession: MIMAT0033995
• Description: Gossypium raimondii gra-miR8639i mature miRNA
• Sequence: 169 - UAAACAUAAGUAGAAUUAAACAAG - 192
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629