miRBase entry: gra-MIR8663a

Stem-loop gra-MIR8663a


Accession
MI0027596
Description
Gossypium raimondii gra-MIR8663a precursor miRNA
Gene family
MIPF0001880; MIR8663


Sequence

ccgugucaggUUUGAACUUGGCAACUUUUUUCACauugagaccuaaacuuuuuuuuauccaaguuagacccuaaacuugguaauuauucccacauuaagcuugaacuuacaauuguucucacauugggguuugaauuugaggguuuucaagggcuaauuuagauaaaaaaagauuucaugucccaaugugagaacauuugucaaguuuagugccuaacuuugacaaca
...(((((((((((((((((((((...(((((((((((.(((..(((.(((((((((((.(((((((.((((((((((...((((...(((.((........((((........))))......)))))....))))...))))))...))))))))))).))))))))))).)))...))).)))))))))))...))))))))))))).)))......)))))...

Structure
ccg     ------   -             CUU           a   -cu   c           c       a    ---      ggu    -auu   a  uuaagcuu    uua 
   uguca      ggU UUGAACUUGGCAA   UUUUCACauug gac   aaa uuuuuuuuauc aaguuag cccu   aaacuu   aauu    ccc ca        gaac   c
   |||||      ||| |||||||||||||   ||||||||||| |||   ||| ||||||||||| ||||||| ||||   ||||||   ||||    ||| ||        ||||    
   acagu      ccg gauuugaacuguu   aagaguguaac cug   uuu gaaaaaaauag uuuaauc ggga   uuuggg   uuaa    ggg gu        cuug   a
aca     uucaau   u             uac           c   uac   a           a       -    acu      agu    guuu   -  --uacacu    uua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 7969947-7970174 [+]

Database links

Mature gra-miR8663a

Accession MIMAT0034001
Description Gossypium raimondii gra-miR8663a mature miRNA
Sequence 11 - UUUGAACUUGGCAACUUUUUUCAC - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629