miRBase entry: gra-MIR8649

Stem-loop gra-MIR8649


Accession
MI0027602
Description
Gossypium raimondii gra-MIR8649 precursor miRNA


Sequence

ucauauauaaggagggaugcacuugcauagcguaaaaacuaaaguaauuuugcauacuuuuguaacuaguuauauaauuaauauuuuaaaaauuuauauaaauauuuacgaaaguguguaaaauuacuuuaauuuuuACACUGUGGAAGUGGAUCUCUCUCauauauauac
..(((((((.((((((((.(((((.(((((.(((((((.((((((((((((((((((((((((((.((.((((((((................)))))))).)).)))))))))))))))))))))))))).))))))).))))).))))).))))))))..)))))))..

Structure
uc       -a        g     g     c       c                          c  g        uuaauau 
  auauaua  ggagggau cacuu cauag guaaaaa uaaaguaauuuugcauacuuuuguaa ua uuauauaa       u
  |||||||  |||||||| ||||| ||||| ||||||| |||||||||||||||||||||||||| || ||||||||        
  uauauau  UCUCUCUA GUGAA GUGUC CAuuuuu auuucauuaaaaugugugaaagcauu au aauauauu       u
ca       aC        G     G     A       a                          u  a        uaaaaau 


Annotation confidence Not enough data
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Genome context
chr13: 57495015-57495185 [-]

Database links

Mature gra-miR8649

Accession MIMAT0034007
Description Gossypium raimondii gra-miR8649 mature miRNA
Sequence 138 - ACACUGUGGAAGUGGAUCUCUCUC - 161
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629