miRBase entry: gra-MIR5741

Stem-loop gra-MIR5741


Accession
MI0027604
Description
Gossypium raimondii gra-MIR5741 precursor miRNA


Sequence

uauuacaugaaucaauuuaguccuuuuacuauuaaaaguaaucaaacaaggcaaauuggaauauagaacauuccaaauuuuuucuacaguacaguuuggauuuauuugauuccuuuuaaUAGUAUAAGGACUAAAUUGGUcuaucucuau
......(((.(((((((((((((((.((((((((((((.(((((((.(((.(((((((.....(((((.............))))).....)))))))..))).))))))).)))))))))))).))))))))))))))).)))......

Structure
uauuac   a               u            u       c   -g       gaaua     cauuc 
      aug aucaauuuaguccuu uacuauuaaaag aaucaaa aag  caaauug     uagaa     c
      ||| ||||||||||||||| |||||||||||| ||||||| |||  |||||||     |||||     a
      uau UGGUUAAAUCAGGAA AUGAUaauuuuc uuaguuu uuu  guuugac     aucuu     a
uaucuc   c               U            c       a   ag       augac     uuuua 


Annotation confidence Not enough data
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Genome context
chr6: 2568464-2568613 [+]

Database links

Mature gra-miR5741

Accession MIMAT0034009
Description Gossypium raimondii gra-miR5741 mature miRNA
Sequence 120 - UAGUAUAAGGACUAAAUUGGU - 140
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629