miRBase entry: gra-MIR8709a

Stem-loop gra-MIR8709a


Accession
MI0027610
Description
Gossypium raimondii gra-MIR8709a precursor miRNA
Gene family
MIPF0001862; MIR8709


Sequence

uuaagaauaaAUAUUAAAACUAUACAUGAACUUUgauccacugugcaaucucauacauuaacuuuaaauuugugugauuuuauauaugaaauuuuguuuugauucaauuuucauaaaucauaaaucauaaacagcauugucaaauuagcaucauuuuacaugcauguauugcauacacaaacaauuauauuauucaauauaaaaacaaauguauguauuuuuuucuuuaaauauguacaauagaaugcaaaucaaaguuuuauguauacauauaauucucaauuuaaauuucacguguauaauugcaccaaaucaaaguucauguaucaaauuacacauuagaccaaaguuuauguauaaauuugauauuuaucccaau
......((((((((((((..(((((((((((((((.((...((((.(((...((((((.((((((..((((((((((((.(((((.((((((((((((((((((..((((....))))....))))).)))))((((.((.((((.......)))).))))))......((((((((.......(((((((....))))))).......)))))))).............(((((((..(((((((..........)))))))...)))))))............)))))))).))))).))))))).))))).)))))).))))))...))).))))...)).)))))))))))))))..))))))))))))......

Structure
uuaaga            AC               a  cac    c   cuc      u      aa     -       u     a        uguuuugauucaauuuucauaaaucauaaaucauaaacagcauugucaaauuagcaucauuuuacaugcauguau        caaacaa       a 
      auaaAUAUUAAA  UAUACAUGAACUUUg uc   ugug aau   auacau aacuuu  auuug ugugauu uauau ugaaauuu                                                                           ugcauaca       uuauauu u
      ||||||||||||  ||||||||||||||| ||   |||| |||   |||||| ||||||  ||||| ||||||| ||||| ||||||||                                                                           ||||||||       |||||||  
      uauuuauaguuu  auauguauuugaaac ag   acac uua   uaugua uugaaa  uaaac acguuaa augug acuuuaaa                                                                           auguaugu       aauauaa u
uaaccc            aa               c  auu    a   aac      c      -c     c       u     c        -------uuuaacucuuaauauacauauguauuuugaaacuaaacguaagauaacauguauaaauuucuuuuuuu        aaacaaa       c 


Annotation confidence Not enough data
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Genome context
chr7: 25000323-25000701 [+]

Database links

Mature gra-miR8709a

Accession MIMAT0034015
Description Gossypium raimondii gra-miR8709a mature miRNA
Sequence 11 - AUAUUAAAACUAUACAUGAACUUU - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629