Stem-loop gra-MIR8654b

Accession

MI0027613

Description

Gossypium raimondii gra-MIR8654b precursor miRNA

Gene family

MIPF0001954; MIR8654

Sequence

aacuuauucuuuuucuccaucaaaguaguauccuuaaccucauuguccaauacuuguggcagaguugggggcaauaagacuuuucgggggaagagugauugugacuauggagaaaagcugaaaugcgacucaagucgguaacgguugcugugauuaaauaauaacuacacccauugucaccuugacucaaauuucaacuuuuucuccaccgucacaguuacucccccugaaaguuuucuuaccccuaccacuaacauaaguuucaaacaacgagguuAAGGAUACUACUUUGAUGGAGAAAaagaauaagu
.((((((((((((((((((((((((((((((((((((((((.((((.....(((((((..((.(.((((((.((.((((((((.((((((..(((((((((((((..((((((((((.((((((..((.((((...(((.(((((.(.((((.(((.....))).)))).).))))).))))))).))..)))))).).)))))))))..))))))))))))))))))))))))))).)).)))))).).))..))))))).....)))).))))))))))))))))))))))))))))))))))))))))

Structure

a                                        a    ccaau       gc  a u      c  u        u      aa             ua         - c      gc  c    guc   a     u c    a   a 
 acuuauucuuuuucuccaucaaaguaguauccuuaaccuc uugu     acuugug  ag g uggggg aa aagacuuu cggggg  gagugauugugac  uggagaaaa g ugaaau  ga ucaa   ggu acggu g ugug uua a
 |||||||||||||||||||||||||||||||||||||||| ||||     |||||||  || | |||||| || |||||||| ||||||  |||||||||||||  ||||||||| | ||||||  || ||||   ||| ||||| | |||| ||| u
 ugaauaagaaAAAGAGGUAGUUUCAUCAUAGGAAuuggag aaca     ugaauac  uc c aucccc uu uuuugaaa gucccc  cucauugacacug  accucuuuu c acuuua  cu aguu   cca uguua c acau aau a
-                                        c    aacuu       aa  a c      a  c        -      --             cc         u a      aa  c    ---   c     c c    c   a 

Annotation confidence Not enough data

Genome context

chr13: 13905950-13906260 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gra-MIR8654b

Mature gra-miR8654b

• Accession: MIMAT0034018
• Description: Gossypium raimondii gra-miR8654b mature miRNA
• Sequence: 278 - AAGGAUACUACUUUGAUGGAGAAA - 301
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629